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Non essential amino acids (neaa)

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Non-essential amino acids are a group of amino acids that can be synthesized by the human body and are not required to be obtained from dietary sources. These amino acids play a crucial role in various physiological processes, including protein synthesis and energy production.

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163 protocols using non essential amino acids (neaa)

1

Culturing Wolbachia and Insect/Mammalian Cells

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Wolbachia (a generous gift from Dr. Horacio Frydman, Boston University) were grown in 1X Minimal Essential Medium (Corning) supplemented with 5% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). Aa23 Aedes albopictus cells with and without Wolbachia wAlbB (a generous gift from Dr. Horacio Frydman, Boston University) were grown at 24 ºC in Schneider's insect media (Sigma-Aldrich) supplemented with 20% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). JW18 Drosophila melanogaster cells with and without Wolbachia wMel were grown at 24 ºC in Shields and Sang M3 insect media (Sigma-Aldrich) supplemented with 10% heat-inactivated fetal bovine serum, 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). Aedes albopictus C636 cells and mammalian BHK-21 and Vero cells were grown at either 28ºC (C6/36) or 37 ºC (BHK/Vero) under 5% CO2 in 1X Minimal Essential Medium (Corning) supplemented with 10% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillinstreptomycin-antimycotic (Corning).
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2

Cell culture conditions for Aedes, Drosophila, and BHK

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RML12 Aedes albopictus cells with and Wolbachia-free wMel was grown at 24°C in Schneider’s insect media (Sigma-Aldrich) supplemented with 10% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning), and penicillin-streptomycin-antimycotic (Corning). C7/10 Aedes albopictus cells with and Wolbachia-free were grown at 27°C under 5% ambient CO2 in 1X Minimal Essential Medium (Corning) supplemented with 5% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). Vertebrate baby hamster kidney fibroblast or BHK-21 cells were grown at 37°C under 5% ambient CO2 in 1X Minimal Essential Medium (Corning) supplemented with 10% heat-inactivated fetal bovine serum (Corning), 1% each of L-Glutamine (Corning), non-essential amino acids (Corning) and penicillin-streptomycin-antimycotic (Corning). JW18 Drosophila melanogaster cells with and without Wolbachia wMel were grown at 24°C in Shield and Sang M3 insect media (Sigma-Aldrich) supplemented with 10% heat-inactivated fetal bovine serum, 1% each of L-Glutamine (Corning), non-essential amino acids (Corning), and penicillin-streptomycin-antimycotic (Corning).
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3

Culturing BHK-21, HEK293, and HEK293T Cells

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BHK-21 (ATCC CCL-10) and HEK293 (ATCC CRL-1573) tissue culture cells were cultured in minimal essential medium (MEM; Cellgro Mediatech, Inc., Manassas, VA, USA) supplemented with 10% fetal bovine serum (FBS; Corning, Corning, NY, USA), 1× penicillin–streptomycin (Pen/Strep; Corning, Corning, NY, USA), 1× nonessential amino acids (NEAA; Corning, Corning, NY, USA), and l-glutamine (Corning, Corning, NY, USA). HEK293T cells were cultured in Dulbecco’s modified Eagle’s medium (Corning, Corning, NY, USA) supplemented with 10% fetal bovine serum, 1× penicillin–streptomycin, 1× nonessential amino acids, and 5 mM l-glutamine. All cells were maintained at 37 °C in a humidified incubator at 5% CO2.
Where specifically noted, tissue culture dishes receiving HEK293 cells were pre-treated with poly-l Lysine (Advanced Biomatrix, Carlsbad, CA, USA) to aid cell adherence and prevent premature detachment during handling. Briefly, tissue culture dishes were pre-treated with 0.1 mg/mL poly-l Lysine for 30 min at 4 °C. After poly-l Lysine treatment, the stock solution was removed and the wells were briefly rinsed twice with 1× PBS and allowed to dry under sterile conditions prior to seeding the dishes with HEK293 cells for use the next day.
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4

PDAC Cell Lines for Cancer Research

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Human pancreatic ductal adenocarcinoma (PDAC) cell lines PANC-I, MIA PaCa-2, Capan-l, and L3.6pl were used in this study. PANC-I was purchased from the American Type Culture Collection (ATCC), USA. L3.6pl was obtained as a gift from Dr. Jose Trevino’s laboratory in the Department of Surgery, University of Florida (Gainesville, FL, USA). MIA PaCa-2 and Capan-l were gifts from Dr. David Foster’s laboratory at the City University of New York. PANC-1 and MIA PaCa-2 cell lines were routinely cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) with non-essential amino acids from Corning (Manassas, VA, USA) and 10% fetal bovine serum (FBS). Capan-l cell line was routinely cultured in Iscove’s Modified Dulbecco’s Medium (IMDM) with L-glutamine from Gibco by Life Technologies (Green Island, NY, USA) and 20% FBS. L3.6p1 cells were cultured in DMEM with non-essential amino acids and sodium pyruvate from Corning and 10% FBS. All cell lines were maintained as adherent cultures at 37 °c in a humidified atmosphere containing 5% CO2.
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5

Optimized CRISPR-mediated genome editing in mESCs and CH12F3 cells

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The mESCs were cultured in ES-DMEM medium (Millipore) with 15% fetal bovine serum (FBS, ExCell Bio), Penicillin/Streptomycin (Corning), Nucleotides (Millipore), L-Glutamine (Corning), Nonessential Amino Acids (Corning), PD0325901 (Selleck), CHIR99021 (Selleck) and LIF (Millipore) at 37°C with 5% CO2. mESCs in 6-cm dishes were transfected with 7.2 μg pX330-Cas9 plus 1.8 μg GFP expression vector by 4D-nucleofector X (Lonza, solution Cytomix, program GC104), then harvested for genomic DNA 3 days after transfection.
The wild-type, Ku80 -/-, Lig4 -/-, Parp1 -/-, and AID -/-CH12F3 cells were cultured in RPIM1640 medium (Corning) with 15% Fetal Bovine Serum (FBS, ExCell Bio), HEPES (Corning), Penicillin-Streptomycin (Corning), L-Glutamine (Corning), Nonessential Amino Acids (Corning), Sodium Pyruvate (Corning) and β-Mercaptoethanol (Sigma-Aldrich) at 37°C with 5% CO2. Growing CH12F3 cells were transfected with 1.5 μg pX330-Cas9 or pX330-Cas9-mCherry expression vector per million by 4D-nucleofector X (Lonza, solution M1, procedure DN100) and seeding at 0.5 million cells/mL in fresh medium with 1μg/mL anti-CD40, 5 ng/mL IL-4, and 0.5 ng/mL TGF-β. After 72 hrs stimulation, the cells were harvested and genomic DNA was extracted for PEM-seq library construction.
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6

Culturing Insect and Mammalian Cells with Wolbachia

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Drosophila melanogaster cells (JW18) with and without Wolbachia (strain wMel) and Aedes albopictus cells (C710) with and without Wolbachia (strain wStri) were grown at 24 °C in Shields and Sang M3 insect media (Sigma-Aldrich, Burlington, MA, USA) supplemented with 10% heat-inactivated fetal bovine serum (Gibco, Waltham, MA, USA), 1% each of l-glutamine (Corning, Corning, NY, USA), non-essential amino acids (Corning, Corning, NY, USA) and penicillin-streptomycin-antimycotic (Corning, Corning, NY, USA). Baby hamster kidney fibroblast (BHK-21) cells were grown at 37 °C under 5% CO2 in 1× Minimal Essential Medium (Corning, Corning, NY, USA) supplemented with 10% heat-inactivated fetal bovine serum (Corning, Corning, NY, USA), 1% each of l-glutamine (Corning, Corning, NY, USA), non-essential amino acids (Corning, Corning, NY, USA) and penicillin-streptomycin-antimycotic (Corning, Corning, NY, USA).
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7

Cell Culture Maintenance Protocols

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The Abrams cell line was maintained in DMEM supplemented with 10% FBS, non-essential amino acids, sodium pyruvate, penicillin, streptomycin and L-glutamine (Corning). OSA8, OSA16 and D17 cell lines were maintained in RPMI supplemented with 10% FBS, 0.1 mM non-essential amino acids, sodium pyruvate, penicillin, streptomycin, L-glutamine (Corning). Cells were maintained in monolayer culture at 37°C in humidified air with 5% CO2 in these growth media.
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8

CRISPR-Cas9 Knockout of DNA Repair Genes in mESCs and CH12F3 Cells

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The mESCs were cultured in ES-DMEM medium (Millipore) with 15% Fetal Bovine Serum (FBS, ExCell Bio), Penicillin/Streptomycin (Corning), nucleotides (Millipore), l-glutamine (Corning), nonessential amino acids (Corning), PD0325901 (Selleck), CHIR99021 (Selleck) and LIF (Millipore) at 37°C with 5% CO2. mESCs in 6-cm dishes were transfected with 7.2 μg pX330-Cas9 plus 1.8 μg GFP expression vector by 4D-nucleofector X (Lonza, solution Cytomix, program GC104), then harvested for genomic DNA 3 days after transfection.
The wild-type, Ku80–/–, Lig4–/–, Parp1–/– and AID–/– CH12F3 cells were cultured in RPIM1640 medium (Corning) with 15% Fetal Bovine Serum (FBS, ExCell Bio), HEPES (Corning), penicillin–streptomycin (Corning), l-glutamine (Corning), nonessential amino acids (Corning), sodium pyruvate (Corning) and β-mercaptoethanol (Sigma-Aldrich) at 37°C with 5% CO2. Growing CH12F3 cells were transfected with 1.5 μg pX330-Cas9 or pX330-Cas9-mCherry expression vector per million by 4D-nucleofector X (Lonza, solution M1, procedure DN100) and seeding at 0.5 million cells/ml in fresh medium with 1 μg/ml anti-CD40, 5 ng/ml IL-4 and 0.5 ng/ml TGF-β. After 72 h stimulation, the cells were harvested and genomic DNA was extracted for PEM-seq library construction.
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9

Cell Culture Conditions for Renal Cell Carcinoma

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Caki-1 and Caki-2 cells (American Type Culture Collection, Manassas, VA) were cultured in McCoy’s 5A (Corning Mediatech, Inc., Manassas, VA) supplemented with 10% fetal bovine serum (Omega Scientific,Inc, Tarzana, CA), 1% antibiotics (100 U/ml penicillin and 100 μg/ml streptomycin; Corning Mediatech, Inc., Manassas, VA), 1% nonessential amino acids (Corning Mediatech, Inc., Manassas, VA) and 1% L-glutamine (Corning Mediatech, Inc., Manassas, VA) at 37°C in a humidified atmosphere in a 5% CO2 incubator. A704 and A498 cells (American Type Culture Collection, Manassas, VA) were cultured in Eagles Minimum Essential Media supplemented with 10% fetal bovine serum (Omega Scientific,Inc, Tarzana, CA), 1% antibiotics (100 U/ml penicillin and 100 μg/ml streptomycin; Corning Mediatech, Inc., Manassas, VA), 1% nonessential aminoacids (Corning Mediatech, Inc., Manassas, VA) and 1% L-glutamine (Corning Mediatech, Inc., Manassas, VA). All cells were maintained at 37°C in a humidified atmosphere in a 5% CO2 incubator.
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10

MCF-7 and T47D Cell Culture Protocol

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MCF-7 and T47D cells were cultured in growth medium containing Dulbecco's minimum essential medium (DMEM) (Cellgro by Mediatech Inc, Manassas, VA) plus 10% fetal bovine serum (FBS) (Hyclone by Thermo Scientific, South Logan, UT), and 1% each of nonessential amino acids (NEAA) (Cellgro), Glutamax and Penicillin-streptomycin-neomycin (PSN) antibiotics mixture (Gibco by Invitrogen Corp. Carlsbad, CA) and maintained at 37°C and 5% CO2. For each experiment, MCF-7 cells are seeded in growth medium for 24 hr. The medium was then replaced with steroid-free medium containing phenol red-free DMEM plus 10% charcoal/dextran-stripped (cs) FBS, and 1% each of NEAA, Glutamax and PSN, and the cells were incubated at 37°C for 48–72 hr before treatment. The cells were pre-treated with 1 μM ICI 182,780 (ICI) or 1 μM in solution AMPK inhibitor compound C/Dorsomorphin (DOS) (Calbiochem, EMD Millipore Corp. Billerica, MA). The cells were treated simultaneously with the following, unless otherwise indicated: 10 ng/ml human tumor necrosis factor alpha (TNFα; Invitrogen), and 10 nM E2, 10 μM resveratrol (RES), 25 μM Rolipram (ROL), or 10 μM Forskolin (FSK) (Sigma–Aldrich Inc., St. Louis, MO).
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