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Color sybr green qpcr master mix

Manufactured by EZBioscience
Sourced in United States, China

Color SYBR Green qPCR Master Mix is a ready-to-use solution for quantitative real-time PCR (qPCR) experiments. It contains SYBR Green I dye, which binds to double-stranded DNA and emits fluorescent signals during the amplification process, allowing for real-time detection and quantification of DNA targets.

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21 protocols using color sybr green qpcr master mix

1

Quantitative PCR Analysis of Gene Expression

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Quantitative polymerase chain reaction (qPCR) was performed as previously described (Liu et al., 2021 (link); Liu et al., 2022 (link)). Briefly, total RNA was isolated using TRIzol reagent (Invitrogen, United States) and concentration was measured using NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, United States). Then RNA was reversely transcribed into cDNA using Color Reverse Transcription Kit (EZBioscience, United States), and qPCR was performed on Bio-Rad CFX-96 (Bio-Rad, United States) with Color SYBR Green qPCR Master Mix (EZBioscience, United States). The 2^-△CT value was calculated and the distal 2^-△CT value was divided by the proximal 2^-△CT value, and the results were normalized. The qPCR primers used in the study are listed in Supplementary Table S1.
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2

Quantifying miR-34a Expression in Cells

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Total RNA was extracted with an EZ-press RNA Purification Kit (EZBioscience, USA). Total RNA was reverse transcribed to cDNA using the Color Reverse Transcription Kit (EZBioscience, USA) following the manufacturer’s instructions. Reverse transcription was performed at 42 °C for 15 min and 95 °C for 30 s.
MiR34a expression was measured with Color SYBR Green qPCR Master Mix (EZBioscience, USA) by using the Roche LightCycler96 Real-Time PCR system (Roche Applied Science, Rotkreuz, Switzerland). The amplification program was 40 cycles of denaturing at 95 °C for 10 s, annealing at 60 °C for 30 s, and extension at 60 °C for 30 s. MiR-34a and U6 were purchased from RiboBio (Guangzhou, China). The sequences of specific primers were used as follows:
miR-34a forward:5’-ACACTCCAGCTGGGTGGCAGTGTCTTAGCTGGT-3’,
Reverse:5’-CTCAACTGGTGTCGTGGA-3’;U6forward:5’-GCTTCGGCAGCACATATACTAA-3’, reverse: 5’-AACGCTTCACGAATTTGCGT-3’. The expression level of miR-34a was defined from the Ct. U6 was used as an endogenous control. The 2−ΔΔt method was used for relative quantification after normalization.
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3

Quantitative Real-Time PCR Protocol

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Quantitative polymerase chain reaction (qPCR) was performed as described in our previous study [25 (link)]. In brief, total RNA was extracted using TRIzol reagent (Invitrogen, USA), and concentration was measured using the NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, MA, USA). Then, RNA was reversely transcribed into cDNA using Color Reverse Transcription Kit (EZBioscience, CA, USA), and qPCR was performed on Bio-Rad CFX-96 (Bio-Rad, CA, USA) with Color SYBR Green qPCR Master Mix (EZBioscience, CA, USA). The expressions were normalized to Gapdh. The qPCR primers used in the study are listed in Table 1.
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4

Comprehensive RNA Extraction and Quantification

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Total RNA was extracted using either the Tissue RNA Purification Kit PLUS (EZB‐RN001‐plus, EZBioscience, China) or the EZ‐press RNA Purification Kit (B0004DP, EZBioscience) according to the manufacturer's instructions. Following reverse transcription was conducted using the Color Reverse Transcription Kit RNA purification kit (A0010CGQ, EZBioscience) for the complementary DNA synthesis. Quantification of the target gene expression was performed using the Color SYBR Green qPCR Master Mix (A0012‐R2, EZBioscience). Primer sequences applied for the gene amplification are listed in Table S5 (Supporting Information), with GAPDH serving as the housekeeping gene.
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5

Gene Expression Analysis using qRT-PCR

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The RNA Purification Kit (EZBioscience, USA), Color Reverse Transcription Kit (EZBioscience, USA), and Color SYBR Green qPCR Master Mix (EZBioscience, USA) were used for RNA extraction, reverse transcription, and qRT-PCR according to their manufacturer’s instructions. GAPDH was used as an endogenous control. Primers sequences used in our study were as follows: GAPDH forward 5’-GGACCTGACCTGCCGTCTAG-3’, and reverse 5’-GTAGCCCAGGATGCCCTTGA-3’; PAEP forward 5’-GCGACCAACAACATCTCCCTC-3’, and reverse 5’-CGACACAACTCTTCTTCCAGC-3’; NPR1 forward 5’-GCAAAGGCCGAGTTATCTACATC-3’, and reverse 5’-AACGTAGTCCTCCCCACACAA-3’; GLP2R forward 5’-CTTATTCCTTTCCTGGC-3’, and reverse 5’-GACAGGTAGGACATCCACC-3’; FANCC forward 5’-GGCAAAAGCTTGTTGGAATC-3’, and reverse 5’-CCAGGAGTTAAGTTTTGATTGTCC-3’.
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6

qRT-PCR Quantification of Inflammatory Genes

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RAW cells were cultured following the protocol described in section 2.6.2. After three days of incubation, total RNA was extracted from the cells using the EZ-press RNA Purification Kit (EZBioscience, USA). The RNA (1 ​μg) was reverse-transcribed to cDNA using a Color Reverse Transcription Kit (EZBioscience, USA). qPCRs were run using 2 ​× ​Color SYBR Green qPCR Master Mix (EZBioscience, USA) per the manufacturer's protocol. The primers used in the experiment are listed in Table 2.

Primers used in qRT-PCR experiments (mouse origin).

Table 2
GeneForward primer sequence (5′–3′)Reverse primer sequence (5′–3′)
Tumor necrosis factor alpha (Tnfa)AATGGCCTCCCTCTCATCAGTTCCACTTGGTGGTTTGCTACGA
Inducible nitric oxide synthase (iNos)GCTTCTGGTCGATGTCATGAGTCCACCAGGAGATGTTGAAC
Arginase 1 (Arg1)AAGACAGCAGAGGAGGTGAGTCAGTCCCTGGCTTAT
Interleukin-1 receptor antagonist (Il1ra)CTCCAGCTGGAGGAAGTTAACCTGACTCAAAGCTGGTGGTG
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7

RNA Extraction and qRT-PCR Analysis

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EZ-press RNA Purification Kit (EZBioscience) was used to extract total RNA from cells. cDNA was acquired using Color Reverse Transcription Kit with gDNA remover (EZBioscience). Quantitative PCR reactions were conducted using 2 × Color SYBR Green qPCR Master Mix (EZBioscience). The sequences of the primers for quantitative reverse-transcription PCR (qRT-PCR) were shown in Supplementary Materials and Methods.
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8

Quantitative PCR Methodology for Gene Expression

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qPCR was performed according to standard protocols as previously described (19 (link)). Briefly, total RNA was extracted using TRIzol reagent (Thermo Fisher Scientific, USA), and the concentration was measured using NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, USA). For messenger RNA (mRNA), RNA was reversely transcribed into complementary deoxyribonucleic acid (cDNA) using Color Reverse Transcription Kit (EZBioscience, USA), and qPCR was performed on Bio-Rad CFX-96 (Bio-Rad, USA) with Color SYBR Green qPCR Master Mix (EZBioscience, USA). The expressions of interleukin-6 (IL-6), monocyte chemotactic protein-1 (MCP-1), and tumor necrosis factor-α (TNF-α) were normalized to GAPDH. The qPCR primers used in the study are listed in Table 1. For miRNA, the RNA was reversely transcribed into cDNA using Reverse Transcriptase M-MLV (RNase H-) (Takara, Japan). qPCR was performed on Applied Biosystems ViiATM7 Real-Time PCR System (ABI, USA) with AceQ qPCR SYBR Green Master Mix (Vazyme Biotech, Nanjing, China). The expressions of miR-302d-3p, miR-302b-3p, miR-302a-3p, miR-103-3p, 6_9856 (prediction), miR-199b-3p, miR-199a-3p, miR-92a-3p, miR-122-5p, and miR-744-5p were normalized to snoU6. The qPCR primers used in the study are listed in Table 2.
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9

RNA Extraction and qPCR Quantification

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Extractions of total RNA from samples were conducted through the TRIZOL Reagent (Life Technologies). Under manufacturers' instructions, RNA was reversely transcribed into cDNA with Color Reverse Transcription Mix (EZBioscience), which was further quantified by qPCR assays to determinate the relative expression level of target gene with Color SYBR Green qPCR Master Mix (EZBioscience). And 2-∆CT method was conducted to evaluate the relative expression among genes. GAPDH were determined as internal control. All the primers used were listed in Table 7.
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10

qPCR Analysis of Inflammatory Markers

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Quantitative polymerase chain reaction (qPCR) was performed by standard protocols as previously described [14] . Brie y, total RNA was extracted from treated HAECs using TRIzol reagent (Invitrogen, USA) and concentration was measured using the NanoDrop 2000 spectrophotometer (Thermo Fisher Scienti c, MA, USA). Then RNA was reverse transcribed into cDNA using the Color Reverse Transcription Kit (EZBioscience, USA). qPCR was performed on Bio-Rad CFX-96 (Bio-Rad, USA) with Color SYBR Green qPCR Master Mix (EZBioscience, USA). The mRNA expressions of interleukin-6 (IL-6), monocyte chemotactic protein-1 (MCP-1), tumor necrosis factor-α (TNF-α) and Caspase-3 were normalized to glyceraldehyde phosphate dehydrogenase (GAPDH) by using the 2^-△△CT method. The qPCR primers used in the study were listed in Table 1.
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