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73 protocols using 12 channel phased array head coil

1

Multimodal Brain Imaging Protocol

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Structural and functional imaging data were acquired with a 1.5T imaging system (Siemens, Erlangen, Germany) with a 12 channel phased array head coil. Resting state fMRI images were acquired using an echo-planar imaging (EPI) sequence with typical parameters of TR/TE 3,000/30 ms, flip angle 90°, field of view 210 mm, matrix 128 × 128, slice thickness 3 mm, bandwidth 1,395 Hz/pixel, 60 volumes, resulting in a scan time of 3 min. Subjects were instructed to relax their minds, with their eyes closed remaining motionless as much as possible during the data acquisition. In addition, high resolution T1-weighted images were obtained using 3D MPRAGE with TR/TE/TI 1,900/2.53/900 ms, flip angle 9°, FOV 250 mm, in-plane resolution 1.0 × 1.0 × 1.0 mm. T2-weighted images were obtained with parameters of TR/TE 4,000/89 ms, flip angle 150°, FOV 250 mm, in-plane resolution 0.3 × 0.3 mm × 5.0 mm. Diffusion weighted imaging was acquired with a single-shot spin echo EPI sequence and the typical parameters were TR/TE 4,100/100 ms, FOV 250 mm, image matrix 128 × 128, slice thickness 3 mm, and a non-zero b factor of 1,000 s/mm2 applied in 20 gradient directions.
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2

High-Resolution 3D Brain Imaging Protocol

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Scanning was performed on a SIEMENS Trio Tim 3.0 T scanner with a 12-channel phased array head coil in the Imaging Center for Brain Research, Beijing Normal University. We used the 3D high-resolution brain anatomical T1-weighted images in this study, obtained with a sagittal 3D Magnetization Prepared Rapid Gradient Echo sequence. Sample acquisition parameters were as follows: repetition time = 2530 ms; echo time = 3.39 ms; inversion time = 1100 ms; flip angle = 7°; field of view = 256 × 256 mm2; in-plane resolution = 256 × 256; slice thickness = 1.33 mm; number of sagittal slices covering the whole brain = 144; isotropic resolution = 1.33 × 1 × 1 mm3.
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3

3T fMRI Acquisition Protocol

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The MRI data were acquired on a Siemens Trio 3 T MR-scanner equipped with a 12-channel phased array head coil. Functional MRI images were collected using a T2-weighted EPI gradient-echo pulse sequence with the following parameters: TR = 2,000 ms, TE = 25 ms; 90° flip angle, FOV = 250 mm, matrix = 64 × 64, voxel size = 3.5 mm × 3.5 mm × 3.5 mm, interleaved even acquisition, slice thickness = 3.5 mm, 39 slices.
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4

Diffusion Tensor Imaging on 3T MRI

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MRI was performed on a 3-Tesla Trio TIM whole-body MRI scanner (Siemens), equipped with a 12-channel phased-array head coil. DTI was performed using a pair of pulsed-gradient, spin-echo sequences with a single-shot echo-planar imaging readout. A parallel imaging algorithm (generalized autocalibrating partial-parallel acquisition) was applied during diffusion imaging to reduce echo-planar distortion. DTI parameters were 8400-ms time to repetition, 91-ms time to echo, 180° flip angle, 2×2 mm pixel size, 128×128 resolution (256 ×256 mm field of view), 64 2-mm thick slices with no gap, and 9 min 56 s total imaging time. Diffusion-sensitizing gradient encoding was applied in 68 uniform angular directions with a diffusion weighting of b = 1000 s/mm2. A reference image with no diffusion gradient (b = 0) was also acquired.
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5

Simultaneous fMRI and EEG during MSIT

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After obtaining informed consent, subjects were instructed about the MSIT task and were fitted into an MRI-compatible EEG cap. The subjects were placed in the Siemens Verio 3.0 T MRI scanner (Siemens, Erlangen Germany) with the Siemens 12-channel phased array head coil; foam stabilizers were placed around the head of each subject in order to minimize head movement. With the EEG cap on, each participant completed a 30 minute fMRI session. The session began with a localizer scan (13 seconds) for BOLD and anatomical acquisition placement. After this the two task repetitions were acquired with BOLD fMRI (blood oxygen level dependent functional MRI, TR = 3000 ms, TE = 30 ms, matrix size  = 64×64, voxel size was 3.2×3.2×3.2 mm, 30 abutting slices, single-shot EPIs, flip  = 90°) and EEG while the subject performed the MSIT (6 minutes and 42 seconds for each MSIT). Between the first and second MSIT scans, high-resolution T1 anatomical images were acquired with a 3D FLASH (fast low angle shot, TR = 19 ms, TE = 4.92 ms, matrix  = 256×256, 160 images) sequence for co-registration of the functional images.
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6

Multimodal Brain Imaging Protocol

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MR imaging was performed on a Siemens Avanto 1.5 T MRI scanner, using a 12 channel phased array head coil. The MR imaging protocol consisted of a whole brain T1-weighted structural MRI scan and a DTI acquisition. The T1-weighted volume images were acquired using a magnetisation-prepared rapid gradient echo (MPRAGE) sequence with the following parameters: TR/TE/TI = 2400/3.42/1000 ms, flip angle = 80, voxel size = 1.2 mm × 1.2 mm × 1.2 mm, 160 slices (acquired in a sagittal plane), acquisition time = 7 min 42 s.
The DTI (single shot echo planar imaging) sequence parameters were as follows: TR/TE = 8900/109 ms, 63 non-collinear diffusion directions (including 3 interleaved b = 0 acquisitions), voxel size = 2.3 mm × 2.3 mm × 2.3 mm, b-value = 1000 s/mm2, parallel imaging factor = 2, 60 slices (acquired in an oblique axial plane avoiding the orbits where possible), acquisition time = 10 min 7 s. The T1-weighted volume images were clinically reported for any structural abnormalities by an experienced pediatric neuroradiologist.
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7

Multimodal MRI Acquisition Protocol

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MRI data were collected on matched 3T Trio MR scanners (Siemens, Erlangen, German) using the 12-channel phased-array head coil at baseline and repeated at the end of intervention (within 24 h). Foam padding was used to minimize head motion for all subjects. Structural MRI data were obtained using a sagittal magnetization-prepared rapid gradient echo (MPRAGE) three-dimensional T1-weighted sequence with the following imaging parameters: repetition time (TR) = 6.1 ms, echo time (TE) = 2.0 ms, slice thickness = 1 mm, flip-angle = 9°, field of view (FOV) = 256 × 256 mm2, acquisition matrix = 256 × 256, slices = 176. An echo-planar imaging (EPI) sequence was applied to acquire the rs-fMRI data, the parameters were as follows: TR = 2,000 ms, TE = 30 ms, slice number = 30, slice thickness = 4 mm, flip-angle = 90°, matrix = 64 × 64, and FOV = 240 × 240 mm2, in-plane resolution = 3.75 mm × 3.75 mm. For each subject, a total of 250 volumes were acquired, resulting in a total scan time of 500 s. Subjects were instructed to keep their eyes closed, relax, not to think of anything in specific and not to fall asleep.
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8

Multimodal MRI Evaluation Protocol

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All Patients underwent MRI on a 3 T Tim Trio whole body MR scanner (Siemens, Erlangen, Germany) equipped with a 12-channel phased array head coil. The anatomical imaging protocol included axial 3D-T1-weighted magnetization-prepared rapid acquisition of gradient echo (MPRAGE) imaging and an axial T2-FLAIR imaging using standard parameters. The postcontrast T1-weighted images were acquired with the same parameters as the precontrast acquisition after administration of standard dose (0.14 mmol/Kg) of gadobenate dimeglumine (MultiHance, Bracco Imaging, Milano, Italy) intravenous contrast agent using a power injector (Medrad, Idianola, PA).
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9

Longitudinal Brain MRI and Genetics

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Our study included participants with baseline and at least one follow-up structural brain MRI. There were total 174 participants of European descent with UNC5C rs3846455 genotypes, baseline Aβ, and two or more measurements for both PACC and HV. At baseline (for all (n = 174) subjects included in this study), 18 months from the baseline (for n = 32 subjects included in this study), 3 years from the baseline (for n = 168 subjects included in this study), and 5 years from the baseline (for n = 85 subjects included in this study), structural brain MRIs were obtained on one of two matched Siemens Tim Trio 3T scanners at the Massachusetts General Hospital (MGH) – Athinoula A. Martinos Center for Biomedical Imaging, with a 12-channel phasedarray head coil. Hippocampal volume (HV) was calculated from structural T1-weighted, volumetric magnetization-prepared, rapid acquisition gradientecho scans (repetition time 6400 ms, echo time 2.8 ms, inversion time 900 ms, flip angle 8°, and resolution 1×1×1.2 mm) using FreeSurfer v5.1. Summed bilateral HV was used in our analyses, and we included the total intracranial volume (ICV) as a covariate in all HV analyses.
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10

Resting-State and Task-Based fMRI Acquisition

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All the MRI data were acquired on a 3 T Siemens Trio MR scanner with a 12-channel phased-array head coil at the Brain Imaging Center of SCNU. For each subject, the resting-state fMRI (R-fMRI) data were collected by using an echo planar imaging (EPI) sequence with the following parameters: repetition time (TR) = 2,000 ms, echo time (TE) = 30 ms, flip angle = 90°, field of view (FOV) = 224 mm × 224 mm, in-plane matrix size = 64 × 64, slice thickness = 3.5 mm, voxel size = 3.5 mm × 3.5 mm × 3.5 mm, and 32 axial slices. During the R-fMRI scan, the participants were asked to open their eyes to fix a black cross on the screen and lay in the scanner in a supine position. About 180 functional volumes were obtained in a 6 min scan. The T-fMRI data were collected by using the same sequence with the R-fMRI scan. During the T-fMRI scan, the participants were asked to perform a visual creative synthesis task and a control task. Each run included 18 trials and lasted for 770 s (385 TRs; Figure 1IA). Individual high-resolution brain structural images were acquired by using a three dimensional (3D) T1-weighted magnetization-prepared rapid gradient-echo (MP-RAGE) sequence.
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