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Fluoro carbonyl cyanide phenylhydrazone (fccp)

Manufactured by Agilent Technologies
Sourced in United States

FCCP is a chemical compound used in biological research. It functions as an uncoupler of oxidative phosphorylation, disrupting the proton gradient across the mitochondrial membrane and thereby inhibiting ATP production.

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54 protocols using fluoro carbonyl cyanide phenylhydrazone (fccp)

1

Oxygen Consumption Rate of ADSCs and WJ-MSCs

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The oxygen consumption rate (OCR) was measured by analyzing the cells using an XFp analyzer (Seahorse Bioscience, Chicopee, MA, USA). Overall, 3.5 × 104 ADSC and 2.0 × 104 WJ-MSC cells were cultured for 24 h after being attached to an XF cell culture miniplate pre-coated with diluted Matrigel (Corning, NY, USA, 356230). Before analysis, the medium was changed to XF Assay Medium supplemented with sodium pyruvate (Agilent, 103578-100), d-glucose (Agilent, Santa Clara, CA, USA, 103577-100), and l-glutamine (Agilent, 103579-100). To measure mitochondrial respiration, the OCR was assessed using oligomycin (1.5 µM), FCCP (0.8 µM), and rotenone/antimycin A (0.5 µM) (Agilent). The assay was performed according to the manufacturer’s instructions.
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2

Mitochondrial Metabolism in LS8 Cells

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LS8 cells were plated on 96-well plates and transfected. After 48 h, cells were washed and kept in a Ringer solution containing 5 mM pyruvate and 2 mM Ca2+ for 2 h at 37 °C. MitoSOX Red (5 μM) (Invitrogen) and 5 μM Cell Trace Violet (Invitrogen) were loaded (30 min, room temperature) [12 (link)]. After washing with the Ringer solution, fluorescence (450/480 nm) was measured in a FlexStation 3 plate reader (Molecular Devices). The Mitochondrial Stress Test Kit (Agilent) was used to analyze mitochondrial oxygen consumption in LS8 cells, as described [12 (link),17 (link),18 (link)]. Briefly, RCAN1-transfected LS8 cells and controls (empty vector) were seeded for 24 h in an XFe24-well microplate (Agilent) at 2500 cells per well in complete DMEM (10% FBS, 1% penicillin/streptomycin, and 1% glutamine). Oligomycin (1 μM), FCCP (1 μM), and rotenone/antimycin A (0.5 μM) (Agilent) were serially added in a Seahorse XFe24 analyzer. Cell plate and compound plate were loaded into a Seahorse XFe analyzer, and OCR was analyzed. After the run, the protein content of each well was analyzed by bicinchoninic acid (BCA), and data were normalized before analyzing basal respiration, ATP production, maximal respiration, and respiratory reserve.
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3

Mitochondrial Respiration in B12 Cells

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B12 cells were plated at a density of 40,000 cells per well in DMEM (5% FBS and 1% pen/strep) in a Seahorse XFe24 cell culture microplate and incubated overnight in the absence or presence of 100 nM DOPPA. All wells were then washed twice with bicarbonate-free Seahorse XF assay medium (Agilent) supplemented with 10 mM glucose, 4 mM L-glutamine, and 1 mM sodium pyruvate, and pH adjusted to 7.35 +/− 0.05. Following washes, the cell culture plate was incubated in the XF assay medium for 1 hour at 37 oC. Mitochondrial oxygen consumption rate (OCR) was first measured at baseline, and then sequentially after the administration of 1 µM oligomycin (Agilent), 1 µM FCCP (Agilent), and 0.5 µM rotenone/antimycin A (Agilent). After the Seahorse XF MitoStress Test assay, cells in control and treatment wells were lysed and protein harvested using RIPA buffer as stated earlier. Data was normalized by protein concentration.
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4

Profiling B Cell Metabolic Activity

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Splenic naive B cells were purified using Pan B cell Isolation Kit (Miltenyi) and stimulated with 10 ng/ml IL-4 (PrepoTech) and/or 5 μg/ml F(ab’)2 anti-IgM (Jackson ImmunoResearch) for 16 hours. Lymph node cells were obtained after 3 days of influenza infection, cultured with 5 μg/ml F(ab’)2 anti-IgM and 3 μg/ml anti-CD3ε (Biolegend, 145-2C11) and B cells were purified after 16 hours. B cells were resuspended in Seahorse medium supplemented with 11mM glucose (Sigma Aldrich), 2 mM glutamax (Life Technologies) and 1 mM Sodium pyruvate (Life Technologies). Cells were settled on 96-well assay plate (Seahorse Bioscience) coated with poly-lysine (Sigma Aldrich) for 30 minutes. Data was recorded with the XF96 Extracellular Flux analyzer. Oligomycin A (3 μM), FCCP (5 μM) and Rotenone (5 μM) (all from Agilent) were added sequentially at indicated time points to generate the OCR profile.
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5

Measuring Mitochondrial Respiration in Macrophages

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To measure mitochondrial respiration, Seahorse XF Cell Mito Stress Test Kits (Seahorse Biotech cat#: 103015–100) were used as reported39 (link), 64 (link). Macrophages were suspended in serum-free Seahorse XF RPMI 1640 medium and plated in XF96 Cell Culture Microplates (50,000 cells per well). In some experiments, the cells were kept in glucose depleted RPMI1640 medium for 24 hours prior to testing to mimic the tissue environment. O2 consumption rates (OCR; pmol/min) were measured under basal conditions and upon sequential injection of oligomycin (1.5 μM), FCCP (1.5 μM), and rotenone/antimycin A (0.5 μM) (Agilent Technologies) at the indicated time points.
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6

Metabolic Profiling of Infected MDSCs

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An XFe24 sensor cartridge (Agilent, 102340–100) was calibrated as per the manufacturer’s instructions overnight at 37°C without CO2. On the day of infection, the MDSCs were washed once in Seahorse XF DMEM medium (Agilent, 103575–100) supplemented with 2 mM glutamine (Agilent, 103579–100), 1 mM pyruvate (Agilent, 103578–100) and 10 mM glucose (Agilent, 103577–100) 1 h before infection. The cells were infected at a multiplicity of infection (MOI) of 10 and incubated at 37°C without CO2 for 3 h. The oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) were measured using a Seahorse XFe24 analyzer (Agilent). Each measurement cycle consisted of a mixing time of 3 min and a data acquisition period of 3 min (total of 17 data points). BPTES (Selleck Chemicals) and etomoxir (Sigma) were added at final concentrations of 3 μM and 4 μM respectively to inhibit glutaminolysis and FAO. This was followed by the addition of oligomycin (Agilent, 103015–100) at 1.5 μM to suppress OXPHOS, FCCP (Agilent, 103015–100) at 2 μM to increase electron flow and OCR, and rotenone/antimycin A (Agilent, 103015–100) at 0.5 μM to inhibit OXPHOS.
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7

PINK1 Silencing and Opto-dRET Expression

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SH-SY5Y cells were analyzed two days after transient transfection for expression of Opto-dRET constructs and PINK1 silencing efficiency. For stabilization of endogenous full-length PINK1, cells were treated with 10 μM FCCP (Agilent) for 2 h before cell lysis. Proteins were detected by WB using a monoclonal rabbit anti-PINK1 antibody (1:1000; Cell Signaling, D8G3) or an anti-HA antibody (1:1000; Covance, 16B12) for the Opto-dRET constructs. Data were normalized to monoclonal mouse anti-β-actin staining (1:2000; Sigma, AC-74).
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8

Mitochondrial Stress Test of Activated CD8+ T-cells

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The OCR and ECAR of in vitro-activated CD8+ T-cells were measured in XF RPMI media containing 25 mM glucose, 2 mM L-glutamine, and 1 mM sodium pyruvate (Agilent, Lexington, MA, USA). Cells were then plated onto XF8 cell culture microplates (1.5 × 105 cells per well) coated with poly-D-lysine (Sigma-Aldrich) to facilitate T-cell attachment. A mitochondrial stress test was performed by measuring OCR (pmol min-1) at the basal level and after sequential injection of oligomycin (1.5 μM), FCCP (2.5 μM), and rotenone/antimycin A (0.5 μM) (Agilent, CA, USA), and run on an Agilent Seahorse XFp analyzer (Seahorse Bioscience, Agilent, CA, USA). The following assay conditions were used for the experiments with the Seahorse system: 3 min mixture; 0 min wait; and 3 min measurement.
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9

Mitochondrial Stress Test in HSKM Myoblasts

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HSKM myoblasts were seeded onto Seahorse XF96 Cell Culture Microplate (Agilent), pre‐coated with gelatin (0.1%, Merck‐Millipore), in growth media at 10 000 cells per well. Two days after seeding, HSKM myoblasts were induced to differentiate by replacing growth media with differentiation medium. Before performing the Seahorse XF cell Mito Stress Test assay, cell culture media were replaced with assay media containing only palmitate‐conjugated BSA (Agilent) and incubated in a CO2‐free incubator at 37 °C for 1 h to equilibrate temperature and pH for each well. During the assay, Oligomycin (2 µm, Agilent), FCCP (0.5 µm, Agilent), and a mixture of Antimycin A and Rotenone (0.5 µm, Agilent), were injected sequentially and measurements were taken according to manufacturer's instructions. The data were analyzed using WAVE software.
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10

Measuring Cellular Metabolism in HDFs

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The glycolysis rate and the oxygen consumption rate (OCR) in HDFs were measured with a Seahorse XFe24 analyzer (Agilent: Seahorse XFe24 analyzer, Santa Clara, CA, USA) and Wave Software (Agilent: wave controller, https://www.agilent.com/en/product/cell-analysis/real-time-cell-metabolic-analysis/xf-software/seahorse-wave-desktop-software-740897, accessed on 5 March 2022). HDFs were seeded the previous day to reach 95% confluency before measuring. The glycolytic stress test measured the extracellular acidification rate (ECAR) following the manufacturer’s instructions. The OCR was measured using the Mito Stress test. DMEM media supplemented with 2 mM of L-glutamine (Thermofisher, Waltham, MA, USA) was used for the glycolytic stress test. A total of 10 mM of glucose (Agilent), 1 μM of oligomycin (Agilent), and 50 mM of 2-Deoxy-D-glucose (2-DG) (Agilent) were injected during the assay. For the MitoStress test, DMEM media supplemented with 10 mM of glucose, 1 mM of sodium pyruvate (Agilent), and 2 mM of L-glutamine were used. In total, 1.5 μM of oligomycin, 2 μM of FCCP (Agilent), and 0.5 μM of rotenone AA (Agilent) were injected during the assay.
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