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32 protocols using calcein am

1

Multidrug Resistance Dye Efflux Assay

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Rhodamine123 (Rh123) drug efflux was carried out using a Multidrug-Resistance Direct Dye Efflux Activity Kit (Millipore, Darmstadt, Germany), with some modifications. 2.5 × 105 cells were collected and incubated at 4 °C for 1 hour in cold efflux buffer supplemented with 10 µg/mL of Rh123 and 22 µmol/L of drug (CTR-20, colchicine) or a vehicle control. Cell pellets were washed with cold efflux media containing sham control or 22 µmol/L of drug, and resuspended in pre-warmed efflux media containing 22 µmol/L of drug (or vehicle) and incubated for 1 hour in 37 °C water bath. Cells were then placed on ice and fluorescence levels were quantified by flow cytometry using a Beckman Coulter FC500 flow cytometer, 488 nm excitation, FL1 (525 nm/40) emission. Calcein-AM (Santa Cruz, Dallas) efflux was carried out on 1 × 107 cells, which were co-treated with sham control or 22 µmol/L of CTR-20 (or colchicine/verapamil) and 0.5 µmol/L Calcein-AM for 15 min at 37 °C on 10 cm plates, followed by washing/pelleting with ice-cold media. Reading was carried out with a Beckman Coulter FC500 flow cytometer.
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2

Live/Dead Viability Assessment of Cultured Cells

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To assess cell viability, the LIVE/DEAD test was used using an InCell Analyzer 2000 automated microscope (GE Healthcare, Chicago, IL, USA). Cells of examined cell line were seeded on the surface of tested materials at constant amount of about 12 × 104 per well in 2 mL of medium suitable for a given cell line and then cultured for 48 h under standard conditions. As a control, a well with no sample was used. Before observations under a fluorescent microscope, the medium was removed and the cells were washed with PBS solution. The samples were then incubated for 15 min at room temperature in a balanced Hank salt solution containing a mixture of fluorescent dyes: Hoechst 33342 (Molecular Probes, Eugene, OR, USA), calcein AM (Santa Cruz Biotechnology, Dallas, TX, USA), and propidium iodide (Molecular Probes).
The obtained images were analyzed using InCell Analyzer (GE Healthcare) software. All cells were divided into two subpopulations, i.e., live (stained with calcein-AM—gives green color) and dead (stained with propidium iodide—red color). The total number of cells was determined based on blue fluorescence of Hoechst 33342.
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3

Assessing Bacterial Infection Impact on Cell Viability

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A total of 1 × 104 A549 cells were seeded in each well of a 96-well culture plate until they reached 80% confluence. The cells were infected with bacteria (MOI = 50) or bacterial culture media for 2 h. Cell viability was detected with a CCK-8 (Beyotime) according to the manufacturer’s instructions. In addition, the cell viability was determined by calcein-AM (Santa Cruz) staining54 (link). A total of 1 × 105 cells were cultured in cell culture dishes (15 mm) and infected with the indicated PAO1 strains (MOI = 50) for 2 h. The cells were loaded with 4 μm calcein-AM for 30 min in D-Hanks buffer at room temperature (RT), followed by 30 min incubation at RT. Image acquisition was performed with a Leica TCS SP5 confocal laser scanning microscope.
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4

Evaluating Cell Viability in Bioinks

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The migration and the viability of the MG-63 either cultured directly on the MS or inside the bioinks were assessed by live/dead (L/D) staining at different time points (i.e. 0, 3, 7, 14 and 21 days). Specifically, 3 µM calcein AM (Santa Cruz Biotechnology) and 1.5 µM propidium iodide (PI, Sigma-Aldrich) were supplemented to the cells into fresh media as indicators of live and dead cells, respectively. The stained cells were imaged under a laser confocal scanning microscope (LSM 800, Zeiss). In addition, the images of the bioinks obtained at day 0 were used to quantify the cell viability after the extrusion using ImageJ software.
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5

Multifunctional Conductive Polymer Hydrogel

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Poly(vinyl alcohol) (PVA, 88% hydrolyzed, Mw 10 kDa), pyrrole and fluorescein sodium (FL) were purchased from Aladdin Co., Ltd., China. FeCl3·6H2O was provided from Sinopharm Chemical Reagent Co., Ltd., China. Solder Paste Inspection (SPI) conducting silver paste was purchased from Structure Probe, Inc., USA. 3410 glue was obtained from Dow Corning, Corp., USA. Pt counter was purchased from Tianjin Ida Technology Co., Ltd., China. Poly-l-ornithine solution and laminin solution were purchased from Sigma (USA). Calcein-AM and ethidium homodimer-1 (EthD-1) were purchased from Santa Cruz Biotechnology, Inc., USA and Abcam, Inc., USA, respectively.
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6

Mitochondrial Pore Dynamics via Calcein-AM

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NSCs were loaded with calcein-AM (Santa Cruz Biotechnology, Santa Cruz, CA, USA) and CoCl2 (Sigma-Aldrich, St Louis, MO, USA), incubated for 15 min at 37°C. Cells were centrifuged, washed, and cell pellets were resuspended in 0.4 ml PBS and analyzed for mitochondrial calcein-AM fluorescence by flow cytometry analysis. The excitation/emission fluorescence for calcein-AM is 494/517 nm. There is an inverse relationship between calcein-AM fluorescence intensity and the number of mitochondrial permeability transition pore (mPTP) opening.
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7

Evaluating Brucea javanica Seed Extract's Effect on Angiogenesis

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Human Umbilical Vein Endothelial Cells (HUVECs) and endothelial cell medium (ECM,) were purchased from the ScienCell Research Laboratories (San Diego, USA). Porcine aortic endothelial cells with stably transfected human PDGFR-beta were from Professor Rainer Heuchel, Karolinska Institute, Sweden. IMDM was purchased from Gibco BRL (Rockville, USA). Fetal bovine serum was purchased from HyClone Inc. (Logan, USA). Endothelial cell growth supplement (ECGS) was purchased from ScienCell Research Laboratories (San Diego, USA). The In Vitro Angiogenesis Assay Kit was purchased from Millipore (Billerica, USA). Calcein-AM was purchased from Santa Cruz Biotechnology, Inc. (Dallas, USA). Brucea javanica seed was purchased from Changchun pharmacy (Changchun, China). Ethanol extract of Brucea javanica seed were prepared in the Key Laboratory of Pathobiology, Ministry of Education (Changchun, China).
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8

Quantifying Invasive Cell Migration

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The inverted invasion assay was carried out as described previously [116 (link)]. In brief, geltrex (Gibco, A1413302) was mixed 1:1 with PBS and supplemented with 25 μg/ml fibronectin (FN, Sigma), 60 μl of the mix was added to each transwell dish (8 μm polycarbonate membrane, Costar) and allowed to set at 37°C for 45 min. Next 30,000 cells were added to the top of the membrane and transwells were incubated upside down for 4 h to allow cells to settle on the membrane. The wells were then washed twice by dipping into serum free media and placed in 1 ml serum free media in a 24 well plate. On top of the geltrex layer 100 μl serum-rich media was added supplemented with 10 ng/ml EGF and 10 ng/ml HGF. Cells were incubated for 72 h and stained using 4 μM Calcein-AM (Santa Cruz Biotechnology) in media for 1 h. Invading cells were quantified using confocal microscopy by taking pictures every 10 μm throughout the geltrex matrix.
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9

Cytotoxicity Assay Protocol

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1-chloro-2,4-dinitrobenzene (CDNB), cycloheximide, dinitrophenyl-S-glutathione (DNP-SG), genistein (GNT), MK571, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltretazolium bromide (methylthiazole tetrazolium, MTT), perchloric acid, phenylmethylsulfonyl fluoride and leupeptin were from Sigma-Aldrich (St. Louis, MO, USA). PSC833 and calcein-AM were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Sorafenib (Sfb) was from Cayman Chemicals (Ann Arbor, MI, USA). DMSO was purchased from Merck (Darmstadt, HE, Germany). All other chemicals were of analytical grade purity.
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10

Senescent Cell Platelet Adhesion Assay

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In order to examine the ability of platelets to adhere to senescent cells in vitro, a layer of adherent senescent cells (1 μM Palbociclib, 72 h treatment) or DMSO-treated control cells was first generated on coverslips in 6-well plates. A 24 h post-treatment incubation in serum-free medium was then allowed. Following this period, 1 × 106 of washed platelets, previously stained with calcein-AM (Santa Cruz Biotechnology), were directly added to senescent and non-senescent cells and incubated for 3 h under constant agitation. The cells were then extensively washed with 1× PBS, fixed in 4% paraformaldehyde/1× PBS pH 7.4. The nuclei of the cells were visualized with DAPI. Images of platelets were obtained with the green filter (FITC U-3N31001) and those of the cell nuclei with the blue filter (DAPI U-3N31000v2) using a BX53 fluorescence microscope (Olympus, Shinjuku, Tokyo, Japan) and the Capture Pro 7 software (QImagine, Inc., Surrey, British Columbia, Canada). The assays were performed in triplicate, and seven separate microscopic fields per replica were analyzed.
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