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26 protocols using 9 aminoacridine 9 aa

1

Extraction and Analysis of Natural Dyes

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Indigo and alizarin (97%) were purchased from ACROS Organics; indirubin (≥98%), 9-aminoacridine (9-AA, ≥99.5%), erythrosin B (≥95%), 2-iodobenzoic acid (≥99%) and Universal MALDI matrix [1:1 mixture of 2,5-dihydroxybenzoic acid (DHB) and α-cyano-4-hydroxy-cinnamic acid (α-CCA)] were obtained from Sigma-Aldrich, carminic acid (≥96%) from Fluka Analytical, lucidin from Cfm Oskar Tropitzsch GmbH (Marktredwitz), tetrahydrofuran (HPLC grade) from Roth, formic acid (99–100%), trifluoroacetic acid, ethanol, methanol and acetonitrile (all solvents HPLC gradient grade) from VWR, and TLC (thin-layer chromatography) plates (ALUGRAM Sil G) were purchased from Macherey-Nagel. Purpurin has been obtained from Aldrich’s collection of rare chemicals and rubiadin has been synthesized according to procedures of Takano et al.33 (link). Double distilled water was produced in a distillation apparatus bought from Gebr. Rettberg GmbH. An extended tabby weave with blue warps (wool fibers previously vat dyed using natural indigo) and red wefts (wool fibers previously mordant dyed using alum and cochineal) was handcrafted by a textile archaeologist. Recent animal- and plant-derived fibers dyed with synthetic indigo or E120, a food dye extract from scale insects (Dactylopius coccus Costa), were used for first tests (dyeing processes were performed as previously reported28 (link),34 (link)).
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2

Taurine-Based Microscopy Substrate Preparation

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Taurine (99%), 9-aminoacridine (9-AA, 99.5%), ethanol (HPLC grade) and standard microscopic glass slides were purchased from Sigma-Aldrich (Steinheim, Germany). Taurocholic acid (sodium salt, 95%) was from Biomol GmbH (Hamburg, Germany), and potassium chloride (99.5%) from Gruessing GmbH (Filsum, Germany). Purified water was generated by a Millipore (Bedford, MA, USA) purification system.
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3

Reagents and Chemicals for Research

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9-Aminoacridine (9-AA) was purchased
from Sigma-Aldrich. 2,5-Dihydroxybenzoic acid (DHB), hematoxylin and
eosin stains, all high-performance liquid chromatography (HPLC)-grade
solvents, and the Superfrost Plus slides were purchased from the Fisher
Scientific Company. Rifampin was purchased from Gold Biotechnology.
Kanamycin sulfate was purchased from Fisher Scientific. Rifapentine
and rifabutin were purchased from Sigma-Aldrich. Bedaquiline was provided
by Janssen Research and Development.
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4

Quantitative Analysis of Forchlorfenuron

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The standard of forchlorfenuron (purity > 98%) was purchased from Dr. Ehrenstorfer (Augsburg, Germany). Forchlorfenuron-d5, the isotopic internal standard (IS), was purchased from Toronto Research Chemicals (Toronto, ON, Canada). HPLC-grade methanol, formic acid, and pure water were obtained from Fisher (Marshalltown, IA, USA). MALDI-grade α-cyano-4-hydroxycinnamic acid (CHCA), 2,5-dihydroxybenzoic acid (DHB), and 9-aminoacridine (9-AA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Other reagents and solvents used in the present study were of analytical grade.
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5

Radiopaque Contrast Agent Preparation

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Dichloroacetyl chloride (98%, Sigma Aldrich, St. Louis MO) was dissolved in ethiodized oil which served as a radiopaque vehicle (Lipiodol®, Guerbet, Princeton NJ) at 2 mol/L and prepared immediately before use. Reagents were used as supplied without further purification. Sublimation matrices were 2,5-dihydroxybenzoic acid (DHB) and 9-aminoacridine (9-AA, Sigma Aldrich, St. Louis, MO) and were used directly as supplied. Contrast media (Iodixanol, Visipaque® 320, GE Healthcare, Milwaukee, WI) was used directly as supplied.
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6

Mass Spectrometry-Based Tissue Imaging

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The isoflurane anaesthetic and nitrogen 4.0 were obtained from Baxter and Linde (both Bratislava, Slovak Republic), respectively. The indium-tin oxide (ITO) glass slides and α-cyano-4-hydroxycinnamic acid (CHCA) were obtained from Bruker Daltonics (Bremen, Germany). Acetonitrile, methanol, ethanol and water (all LC-MS grade) were obtained from Merck Millipore (Prague, Czech Republic). Trifluoroacetic acid (TFA), chloroform, sodium chloride, 9-aminoacridine (9-AA), haematoxylin solution, Gill no. 2 and DPX mounting media were obtained from Sigma-Aldrich (Prague, Czech Republic). Eosin Y (0.5%) aqueous solution was purchased from VWR Chemicals (Stribrna Skalice, Czech Republic). Hydrochloric and nitric acid (65%, Analpure) were obtained from FlukaBioChemika or Analytika Ltd., respectively (both Prague, Czech Republic). Deionized water (18.2 MΩ/cm) was prepared using a Milli-Q system (Millipore, Molsheim, France). Omni Slides with hydrophobic surfaces were purchased from Prosolia, Inc. (Zionsville, USA).
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7

Bile Acid Compound Procurement for Analysis

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Cholic
acid (CA), deoxycholic acid (DCA),
chenodeoxycholic acid (CDCA), lithocholic acid (LCA), taurocholic
acid (TCA), taurodeoxycholic acid (TDCA), taurochenodeoxycholic acid
(TCDCA), glycocholic acid (GCA), glycochenodeoxycholic acid (GCDCA),
glycodeoxycholic acid (GDCA), 2,5-dihydroxybenzoic acid (DHB), 9-aminoacridine
(9AA), chloroform (CHCl3), and trifluoroacetic acid (TFA)
were purchased from Sigma-Aldrich (Zwijndrecht, The Netherlands).
Methanol (MeOH) was purchased from Biosolve (Valkenswaard, The Netherlands).
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8

Optimized Acridine Sample Preparation

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All solvents (ULC grade) were purchased from Merck (Italy) unless stated otherwise. 9-Aminoacridine (9AA) was purchased from Sigma-Aldrich (Italy). ITO glass slides were obtained from Bruker Daltonics GmbH (Bremen, Germany). Chloroform and ethanol (HPLC grade) were purchased from Sigma-Aldrich (Italy). Methanol (LC-MS grade) was from Fisher Scientific (Italy).
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9

9-Aminoacridine Preparation and Administration

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9-aminoacridine (9AA) was from Sigma-Aldrich (St. Louis, MO). For in vitro studies, stock solutions of 9AA were made in dimethylsulfoxide (DMSO), and subsequently diluted in RPMI 1640 medium for use. For in vivo studies, 9AA was dissolved in a solution with 10% polyethylene glycol 300 (PEG300) (VWR, Bridgeport, NJ) and continuously administrated via a subcutaneous mini-osmotic pump (Alzet, Cupertino, CA). Campath-1H was from Genzyme Corporation (Cambridge, MA) and diluted in PBS before use.
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10

MALDI-TOF Analysis of Inositol Phosphates

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Inositol phosphates from D. discoideum cell extract were purified as described above and previously [28] (link) and directly subjected to mass spectrometry [37] (link). Matrix-assisted laser desorption ionization (MALDI) mass spectrometry was performed on a Voyager DE-STR (Applied Biosystems, Framingham, MA), equipped with a MALDI ion source and a time-of-flight mass analyzer (MALDI-TOF). 9-aminoacridine (9-AA, Sigma-Aldrich) was used as matrix, due to its superior performance in revealing acidic analytes in negative ion mode [37] (link). A double deposition sample preparation procedure was adopted. Typically, 0.5 µL of matrix solution, consisting of 7 mg/mL 9-AA in a 1∶1 mixture (v/v) of acetonitrile and water was spotted on the stainless steel MALDI sample stage and air-dried. Then, 0.5 µL of the analyte solution, either pure or diluted 1∶5 (v/v) in water, was spotted on to the matrix crystals and allowed to dry. Mass spectra were acquired in delayed extraction, reflectron negative ion mode using the following settings: accelerating voltage 20,000 V, grid voltage 73%, extraction delay time 300 nsec, acquisition mass range 300–1,500 m/z. Each spectrum was the average of 400–500 individual laser shots acquired in series of 100 consecutive shots.
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