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96 protocols using l 15 medium

1

Isolation of Fish Head Kidney Macrophages

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Isolation of head kidney macrophages was performed according to Secombes [32] , with modifications. Head kidney was homogenised through a 100 μm nylon mesh with 5 ml L-15 medium (Sigma, UK) containing 10 μl heparin (50 mg ml−1) (Sigma, UK). Cell suspensions were layered onto 34%/51% Percoll gradients and centrifuged at 400 g for 30 min at 4 °C. The band of cells at the 34–51% interface was transferred into 15 ml centrifuge tubes and the volume adjusted to 15 ml with L-15 medium. Suspensions were centrifuged at 600 g for 7 min at 4 °C. The resultant cell pellets were re-suspended in 1 ml L-15 medium containing 5% foetal calf serum (Sigma, UK) and 1% potassium benzyl-penicillin/streptomycin sulphate (Sigma, UK). Cells were counted using a Neubauer haemocytometer and cell concentrations adjusted to 1 × 107 cells ml−1.
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2

Isolation and Culture of Spiral Ganglion Neurons

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Postnatal day 3 to 5 (P3–5) and 14 to 16 (P14–16) mice were used to obtain the SGN primary culture (Valdés-Baizabal et al., 2015 (link)). The mice were anesthetized using sevoflurane (Pisa Farmacéutica, Guadalajara, México) and were decapitated. SGNs were isolated and dissect from both inner ears and were incubated (30 min at 37°C) in 1.25 mg/ml trypsin and 1.25 mg/ml collagenase (both from Sigma–Aldrich, St. Louis, MO, USA)- diluted in L-15 medium (Sigma–Aldrich). After enzyme treatment, the ganglia were washed three times with sterile L-15 medium. The cells were mechanically dissociated using a Pasteur pipette and then seeded on 12 mm × 10 mm glass coverslips (Corning, Corning, NY, USA) pretreated with poly-D-lysine (Sigma–Aldrich). These neurons were incubated for 18–24 h in a humidified atmosphere (95% air and 5% CO2 at 37°C) using a CO2 water-jacketed incubator (Nuaire, Plymouth, MN, USA). The L-15 medium used for cell culture contained 15.7 mM NaHCO3 (Merck, Naucalpan, México), 10% fetal bovine serum (Gibco, Grand Island, NY, USA), 100 IU/ml penicillin (Lakeside, Toluca, México) and 15.8 mM HEPES (Sigma–Aldrich).
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3

Optogenetic Assay for HEK293 Cells

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HEK293 cells were grown on glass bottom plates in the absence of retinal and transfected transiently with JellyOp-IRES-TurboFP635 and NES-venus-MiniGαs (kind gift form N. Lambert, Augusta University) using Mirus TransIT®-LT1 transfection reagent (Mirus Bio). After 24 h, the culture medium was exchanged to L15-medium (Merck, CO2 independent) and plates were imaged on a Zeiss Laser Scanning Microscope 880 with Zen (black edition) software. Subsequent experiments were conducted in darkness using only dim far-red illumination. L15-medium containing 2 µM 9-cis retinal (Merck) was added to the cell plates at a 1:1 volume to reach a final 9-cis retinal concentration of 1 µM. The cells were then left in the dark for 10 min before images were taken again. To minimise effects of the imaging light, and capture the “dark state” as accurately as possible, we used a scan speed of 6 and captured the Venus (NES-venus-MiniGαs) channel first. Cells were then exposed to epi-fluorescence illumination (500 nm; 5 × 1013 photons/cm2/s; 10 min) before they were imaged again. Changes in fluorescence intensity across the cell membrane were measured in ImageJ v 2.3 (Rasband WS, NIH, Bethesda, Maryland, USA) and normalised in Igor Pro (Wave Metrics).
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4

Cell migration assay with compound 1

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Cells were seeded at 500 cells/well with 1μg/mL Hoechst3342 (Sigma) in μClear 96 well black plate (Dutscher) in L-15 medium (Sigma) supplemented with 10%FBS. After 24 hours, medium was removed and fresh medium containing DMSO or 20 μmol/L compound 1 was added. Migration was followed by fluorescent microscopy (IN Cell Analyzer 1000, GE Healthcare) during 6 hours. Analyses were performed only on cells tracked during the entire assay. Speed and trajectories were computed with Excel software as previously reported [26 (link)].
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5

Bacterial Culturing and Cell Line Maintenance

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The bacteria used in this study were reported previously [41 (link)]. Vibrio anguillarum, Vibrio harveyi, Pseudomona fluorescens, and Edwardsiella tarda were cultured in Luria-Bertani (LB) broth at 28 °C. Streptococcus iniae was cultured in Tryptic Soy Broth (TSB) at 28 °C. Bacillus cereus and Bacillus subtilis were cultured in marine 2216E medium at 28 °C. Escherichia coli, Micrococcus luteus, and Staphylococcus aureus were cultured in LB broth at 37 °C. All bacteria were grown overnight in appropriate media and temperature; the cultures were then diluted 1:100 in fresh medium and cultured to the mid-logarithmic phase. The bacteria were harvested by centrifugation and washed three times with PBS. The Japanese flounder cell line FG–9307 [42 ] was cultured at 24 °C in L-15 medium (Sigma, St Louis, MO, USA) containing 10% FBS (ExCell Bio, Shanghai, China), 100 units/mL penicillin, and 100 µg/mL streptomycin.
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6

Culturing and Challenging Leishmania Cells

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Leishmania longipalpis embryonic LL5 cells were grown in L-15 medium (SIGMA - Aldrich) supplemented with 10 % fetal bovine serum (Laborclin), 10 % tryptose and 1 % penicillin/streptomycin (100 U/ml/100 mg/ml), at 29 °C [9 (link)].
Bacteria were grown overnight in LB and yeast in YPAD liquid medium. Escherichia coli (strain DH5α) and Staphylococcus aureus (strain ATCC 23235) were grown at 37 °C, Serratia marcescens isolated from field insects [19 (link)] and Saccharomyces cerevisiae (strain YRG-2) were incubated at 30 °C. Each culture was pelleted, washed with sterile phosphate-buffered saline (PBS) pH 7.4, resuspended in fresh PBS at OD600 = 0.5, immediately autoclaved, cooled to room temperature, and used in challenge procedures of LL5 cells.
Leishmania infantum chagasi (MHOM/BR/1974/PP75) obtained from the Leishmania collection of Instituto Oswaldo Cruz was maintained in M199 medium, pH 7.0, supplemented with 10 % fetal bovine serum and collected at exponential growth phase, washed with PBS, and resuspended in fresh PBS at 107 parasites/ml for direct use in challenge procedures of LL5 cells.
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7

Phagocytosis by Trout B Cell Subsets

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Phagocytosis by trout IgM+ and IgT+ B cells was performed as described previously (8 (link)). Briefly, fluorescent beads (Fluoresbrite Yellow Green Microspheres, 1.0 µm in diameter; Polysciences) in 300 μl L-15 medium (Sigma-Aldrich) were seeded in 24-well plates (Nunc) at a density of 107 beads/well and pelleted by centrifugation at 2,500 g for 5 min. Then trout PBLs or HKLs in 300 μl L-15 medium were added to each well at a cell:bead ratio of 1:10, followed by incubation for 3 h at 17°C. After incubation, cell suspensions were centrifuged (100 g for 10 min at 4°C) over a cushion of 3% (weight/volume) BSA (Thermo Scientific) in PBS supplemented with 4.5% d-glucose (Sigma-Aldrich) to remove the non-ingested beads. The collected cells were stained with anti-trout IgM and anti-trout IgT mAbs as described above, followed by FACS to sort the phagocytic and non-phagocytic IgM+ and IgT+ B cells using BD FACSAria III (BD Biosciences). Cells were collected and subjected to total RNA isolation and cDNA synthesis as described above. The relative expression levels of AMP genes in the phagocytic and non-phagocytic trout B cells were determined by the Ct method and normalized against the internal control EF-1a using the 2−ΔΔCt method (34 (link)).
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8

Colon Cancer Cell Lines: Cultivation and Grouping

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Colon cancer cell lines used in this study were purchased from American Type Culture Collection (Sigma-Aldrich Corp, St Louis, MO, USA). HT-29 cells were cultured with RPMI-1640 medium (Sigma- Aldrich), and SW620 cells were cultured with L-15 medium (Sigma- Aldrich). All media were supplemented with 10% fetal bovine serum and 1% antibiotic/antimycotic solution (Biowest, Nuaille, France). All of the cell lines were grown in 5% CO2 at 37°C in incubators with 100% humidity.
Considering SW620 cell line was more aggressive, and HT-29 was less aggressive than other colon cancer cell lines [3 (link)], both of them were selected in the experiment. Colon cancer cell lines SW620 and HT29 were cultivated in vitro and divided into six groups according to different treated factors, as shown in Table 9.
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9

Melanoma Cell Line Culture and GFAT2 Overexpression

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Human melanoma cancer cell lines WM983A and WM852 (provided by Dr. Meenhard Herlyn, The Wistar Institute, Philadelphia, PA) were grown in 3:1 Dulbecco's modified Eagle's Medium/Nutrient Mixture F12 ham (DMEM-F12, Sigma) and L-15 Medium (Sigma) supplemented with 10% heat-inactivated fetal bovine serum (FBS), 100 units of penicillin, and 100 mg/ml streptomycin (#P433, Sigma), at 37°C with 5% CO2. To induce human GFAT2 over expression, WM852 cells were transfected with 100 ng of plasmid for GFAT over expression using the transfection reagent FuGENE HD (Promega #E2311).
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10

Rift Valley Fever Virus Amplification

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RVFV strain 35/74 was originally isolated from the liver of a sheep that died during a RVFV outbreak in the Free State province of South Africa in 197421 (link). The strain was previously passaged four times in suckling mouse brain and three times in BHK cells. The virus used for IV inoculation of sheep was prepared by a further amplification in BHK-21 cells (ATCC CCL-10) cultured in CO2-independent medium (CIM, Invitrogen), supplemented with 5% FBS (Bodinco) and 1% Pen/Strep (Invitrogen).
To prepare a virus-spiked blood meal for membrane feeding of mosquitoes, the virus was amplified in Aedes albopictus C6/36 cells (ATCC CRL-1660). To this end, C6/36 cells were inoculated with a multiplicity of infection of 0.005 and cultured at 28 °C in absence of CO2 in L-15 medium (Sigma) supplemented with 10% fetal bovine serum (FBS), 2% Tryptose Phosphate Broth (TPB) and 1% MEM nonessential amino acids solution (MEMneaa). At 4 days post infection, culture medium was harvested, cleared by slow-speed centrifugation and titrated using Vero-E6 cells (ATCC CRL-1586), grown in DMEM supplemented with GlutaMAX, 3% FBS, 1% Pen/Strep and 1% Fungizone (DMEM +) at 37 °C and 5% CO2. Titers were determined using the Spearman-Kärber algorithm22 (link),23 .
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