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60 protocols using oxytherm

1

Nematode Oxygen Consumption Assay

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Oxygen consumption rates were measured using the Oxytherm (Hansatech, United Kingdom), a Clark-type oxygen electrode as described previously (Schulz et al., 2007 (link)). The collected nematodes were resuspended in 1 mL of M9 and transferred to the chamber. Oxygen concentration was monitored with a Clark electrode in a closed chamber for 10 min. The nematodes were subsequently collected. Protein concentration was measured using the BCA Protein Assay kit.
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2

Astrocyte Oxygen Consumption Rates

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The oxygen consumption rate of SAMP8 and SAMR1 astrocytes was determined under basal conditions, namely in the absence of inhibitors or uncouplers. The resting respiration rate was determined in cultures previously treated with AL or CR serum for 48 h. Cells were trypsinized and resuspended in DMEM. Oxygen consumption of the intact cells was monitored using a S1 Clark-type electrode of high sensitivity (Oxytherm, Hansatech, Norfolk, UK) and calculated using specific software (Oxygraph Plus software; Hansatech). Results were obtained as nmol oxygen consumed/min/106 cells.
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Measuring Mitochondrial Respiration in HUVECs

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Mitochondrial respiration in whole cells was measured by an oxygen consumption assay, as described.27 (link) Following incubating with 1.5 mM Hcy for 20 hours, HUVECs were resuspended in 1 mL of fresh culture medium pre-equilibrated with 21% oxygen at 37°C, followed by applying the cells to the sealed respiration chamber of a Clark-type oxygen measuring system (Oxytherm; Hansatech Instruments, Cambridge, UK) with constant stirring.
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Mitochondrial Isolation and Respiration

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Mitochondria were isolated from developmentally similar seedlings grown on MS agar plates (equivalent to 2 weeks old for Col-0) using differential centrifugation as described previously (Lister et al., 2007) . Mitochondrial proteins were separated on BIO-RAD anyKD pre-cast gels, then blotted and detected as previously described (Zhang et al., 2012) . Oxygen electrodes (Oxytherm, Hansatech, UK) were used for isolated mitochondrial respiratory assays as previously described (Jacoby et al., 2015) .
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5

Mitochondrial Function Analysis in C. elegans

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Polarographic analysis in mitochondria isolated from synchronous adult worm populations was performed, as previously described (Falk et al 2006 ). Briefly, pcca-1 and pccb-1 knockout worm strains were grown in liquid culture. Freshly washed, synchronized, first day young adult worm populations were subjected to mitochondrial isolation procedures by differential centrifugation and homogenization, as previously described (Falk et al 2006 ). Polarographic analysis of freshly isolated mitochondria was performed using a Clark-type electrode (Oxytherm, Hansatech Instruments, United Kingdom), according to established protocol (Kayser et al 2003 ). All polarographic analyses were performed in technical duplicates with two biological replicate experiments per strain.
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6

Ginsenosides Enhance Cardiac Cell Respiration

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2 × 106 H9c2 cells were seeded in 100 mm culture plate. After being grown to stable attachment, cells were preincubated with ginsenoside Rb2, ginsenoside F1, ginsenoside Rc, and schisandrin A at final concentrations (20 μM) for 18 h before being exposed to t-BHP (100 μM) for 1 h. Cells were washed with PBS twice, subsequently collected by trypsinization followed by centrifugation, and resuspended in fresh medium. Respiratory activity was measured with a Clark-type oxygen electrode (Oxytherm, Hansatech Instruments, UK). An aliquot (1 mL) of suspended cells (2 × 106 cells/mL) was placed in the air-tight liquid-phase oxygen electrode chamber. The system was maintained at 37°C. After equilibration, the slope of oxygen consumption in H9c2 cells was measured. Every 1 × 106 cells oxygen consumption was calculated as the basic respiration rate of each group. The experiment was also performed in the presence of SIRT1 inhibitor, EX527 at final concentration of 20 μM to investigate whether the effect of ginsenoside Rb2 can be prevented by SIRT1 inhibitor.
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7

Measuring Oxygen Consumption Rates

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Oxygen consumption rates were measured using an Oxytherm (Hansatech) oxygen electrode as previously described (Schulz et al. 2007 (link); Lee et al. 2009 (link); Rauthan et al. 2013 (link)). A Pierce BCA Protein Assay Kit (Thermo Scientific) was used to measure protein concentration.
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8

Metabolic Profiling of Cell Cultures

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The medium was collected to detect glucose uptake, lactate production and pH. The glucose uptake and lactate production were assessed with glucose uptake assay kit and lactate assay kit (Sigma, USA) following manufacturer’s instructions. The oxygen consumption rate was measured using a Hansatech Oxytherm (Hansatech, King’s Lynn, UK).
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9

Mitochondrial Respiration Assay Protocol

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Freshly isolated brain mitochondria were used to perform mitochondrial respiration assays using a temperature temperature-regulated Clark-type oxygen electrode (Oxytherm, Hansatech) as described previously[29 ]. Isolated mitochondria were added into respiration buffer [225 mM mannitol, 75 mM sucrose, 2 mM K2PO4, 0.1% BSA, 5 mM Hepes, and 1 mM EGTA, (pH 7.2)], followed by 10 passages through a 27 ½ g needle (BD). The homogenate was added to a magnetically stirred chamber and energized with 5 mM glutamate/5 mM malate (Sigma-Aldrich) or succinate (5mM) to allow the mitochondria to respire via complex I or complex II, respectively. 250 µM ADP was added and state III was measured. State IV respiration was measured once the ADP was used up. The ratio of state III respiration over state IV respiration was defined as the Respiration Control Ratio (RCR).
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10

Cardiac Mitochondrial Function and MPTP Susceptibility

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Cardiac mitochondria were isolated from WT and DKO mice as described previously43 (link) through differential centrifugation. Mitochondrial respiratory function was measured using an Oxytherm (Hansatech) as previously described.44 (link), 45 (link) Mitochondrial H2O2 emission was measured using Amplex Red (Invitrogen, Paisley, UK) in isolated mitochondria (500 μg/ml) suspended in Miro5 respiration buffer, according to the manufacturer's instructions. Complex I activity was stimulated by the addition of 5 mM Glutamate, 5 mM Malate, and 1 mM Pyruvate, and complex II activity by the addition of 10 mM Succinate and 0.5 mM rotenone. Susceptibility to MPTP opening was investigated in isolated cardiac mitochondria using a calcium-induced mitochondrial swelling assay, as previously described45 (link) with optical density measured by spectrophotometry (FLUOstar Omega, BMG Labtech, Cary, NC, USA) for 20 min. Treatment with the known MPTP inhibitor, cyclosporin-A (1.0 μmol/l), was used as a positive control.
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