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24 protocols using ab21176

1

Plasmid-based Reporters for Signaling Pathways

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The following plasmids were implemented: a genetic reporter for BMP activity consisting of a BMP responsive element (BRE) which drives expression of GFP. BRE-GFP contains two copies of two distinct and conserved elements of the binding sites for Smad4 upstream of a minimal tk promoter [49 (link), 50 (link)]. Specificity of the BMP reporter was previously verified by co-electroporation with pEFBOS-mBMP4 [51 (link)]. A reporter containing 12 TCF binding sites upstream of a minimal promoter driving destabilized enhanced GFP (12 TOPFLASH-d2EGFP) was used to detect Wnt β-catenin dependent activity [52 (link)]. In addition, to determine the presence of YAP-TEAD activity [53 (link), 54 (link)], we implemented the 8xGTIIC-luciferase reporter (plasmid: 34615; Addgene, Cambridge, MA) followed by immunostaining with a rabbit polyclonal anti-luciferase antibody (Abcam, ab21176) and fluorescent detection with a RFP-anti rabbit antibody (code #111–295-144; Jackson Immunoresearch, PA).
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2

Immunofluorescence Staining of Tissue Sections

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Immunostaining of tissue sections was done using a primary Rabbit Anti-Firefly Luciferase antibody (Abcam product # ab21176) and a Donkey Anti-Rabbit IgG secondary conjugated to Alexa Fluor 594 (Abcam product # ab150076). 15-micron sections of the tissue were placed on slides and kept at −80 °C. The slides were then washed using TBS plus 0.05% Triton X-100 buffer. Samples were blocked in 10% goat serum with 1% BSA. Primary antibody (12 hours at 4 °C) was used per manufacture’s recommended dilution. After washing, the secondary antibody was added at the manufacture’s recommended concentration for 1 hour at room temperature. Fluorescent imaging was done using a Leica SP5 confocal system.
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3

Intracellular Luciferase Staining and Flow Cytometry

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For staining of intracellular luciferase, cells were fixed with citofix/cytoperm (Becton Dickinson Bioscience) at 4°C for 20 min, rinsed twice with permeabilization buffer (PBS, 1% FBS, 0.1% saponin), and incubated with a luciferase specific FITC‐conjugated mAb (100ng/1 × 105cells) (Abcam ab21176). After incubation cells were resuspended in staining buffer to be then analyzed by flow cytometry using a FACSCanto instrument (Becton Dickinson Biosciences). Isotype and subclass matched goat IgG (100 ng/ml) were used as negative controls in all the experiments (Figure S1). Cell Quest software (Becton Dickinson Biosciences) was used for data analysis.
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4

Immunofluorescent Staining of Aortic and Carotid Tissues

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Aortas and carotid arteries from HLL mice were isolated and frozen in OCT medium. Tissues were cryosectioned (Leica Microm Cryostat) into 10-μM-thick sections and mounted on glass slides. Slides were fixed with 10% Zn/formalin solution and blocked for 1 hour in blocking buffer (1× PBS, 5% normal goat serum, 10% BSA). Sections were incubated with anti-luciferase (1:1,000, Abcam ab21176) and/or anti-CD31 (1:500, Abcam ab56299) overnight at 4°C followed by 1-hour incubation with goat anti-rabbit Alexa Fluor 488 or goat anti-rat Alexa Fluor 568 secondary antibodies (Thermo Scientific), respectively. Sections were mounted with medium containing DAPI (VectaShield). Images were taken by fluorescence microscopy at ×40 or ×60 magnification (Olympus BX-61). All images were taken at the same time and using the same imaging settings.
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5

Immunostaining Protocol for Tissue Sections

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Immunostaining followed published protocols [33 (link)]. In brief, tissue sections were de-paraffinized then permeabilized with 0.5 % TritonX-100. Antigen retrieval was performed using Antigen Unmasking Solution (Vector Labs), following which slides were blocked with 5% goat serum (Vector S-1000) for 1 h at room temperature then incubated with primary antibodies overnight at 4 °C. After washing with PBS, slides were incubated with Cyanine5 conjugated goat anti-rabbit secondary antibody (Invitrogen, A-10523) for 30 min, then mounted with 4,6-diamidino-2-phenylindole (DAPI) mounting medium (Vector Labs). Primary antibodies used in this study include anti-luciferase antibody (1:1000, ab21176, Abcam), anti-PCNA (1:5000; ab18197, Abcam), anti-Runx2 (1:1000; ab192256, Abcam), and anti-green fluorescent protein (GFP) (1:400; 2956S, Cell Signaling Technology).
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6

Immunofluorescence Staining of MCP-1 and Luciferase

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For immunofluorescence staining, antigen retrieval of deparaffinized tissue sections was performed by microwave on the middle for 20 min. After being blocked with 5% donkey serum (Solarbio, Beijing, China) for 1 h at room temperature, the sections were incubated with primary antibodies at 4°C overnight, followed by incubation with anti-rabbit Alexa Fluor 488 (A21206; Life Technologies, Carlsbad, USA) or anti-goat Alexa Fluor 594 (A11058; Life Technologies) conjugated secondary antibodies. DAPI (Life Technologies) staining was performed for nuclear counterstaining. Fluorescent images were visualized by using a laser-scanning confocal microscope system (OLYMPUS, Tokyo, Japan). The following primary antibodies were used: goat polyclonal anti
-MCP-1 antibody (sc-1785; Santa Cruz Biotechnology, Dallas, USA) and rabbit polyclonal anti-Firefly Luciferase antibody (ab21176; Abcam, Cambridge, UK).
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7

Histological and Fluorescence Analysis of Xenograft Tissues

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As we have previously described [14 (link)], mice were killed at the indicated time points after challenge and xenograft tissues were trisected for histology and fluorescence staining. Samples for histological analysis were fixed in neutral buffered 4% paraformaldehyde (PFA), paraffin embedded, and sections were cut at a thickness of 5 μm and stained with hematoxylin and eosin (H&E). Fresh xenograft tissue for fluorescence staining was fixed in 2.5% PFA overnight at room temperature, incubated with 15% (w/v) sucrose for 12 hours at 4°C and frozen in Tissue-Tek® (EMS, Hatfield, PA) embedding medium. Serial 10 μm cryosections were stained with phalloidin (Sigma) and 4’, 6’-diamidino-2-phenylindole (DAPI) (Sigma). For immunofluorescence staining primary antibodies were anti-luciferase antibody (ab21176 Abcam, Cambridge, UK) and alexa fluor 594 Donkey anti rabbit (A21207 Invitrogen, Carlsbad, CA) were used as secondary antibodies. Sections were mounted with VectaShield (Vector Laboratories,Burlingame, CA) and imaged with an Axio Imager M1 upright light microscope (Zeiss, Germany) coupled to a MR3 CCD camera system (ZEN 2012).
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8

Protein Expression and Immunostaining

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Proteins were extracted using Bicine/CHAPS lysis buffer. Lysates were then separated via gel electrophoresis (Bio-Rad) and transferred to PVDF membranes using standard protocols. MYC and FLuc protein levels were detected using an anti-MYC (ab32072, Abcam)51 (link) or anti-FLuc (ab21176, Abcam)52 (link) antibody, respectively. The blot was imaged using a LI-COR scanner and analyzed by ImageJ.
Paraffin-embedded tumor sections were deparaffinized by successive incubation in xylene, 95% ethanol, 90% ethanol, and 70% ethanol, followed by PBS. Epitopes were unmasked by steaming in DAKO antigen retrieval solution for 45 min and then rinsed twice in PBS. The sections were blocked using DAKO blocking solution, and then immunostained overnight at 4 °C using primary antibodies (MYC, 1:150, Epitomics). Sections were then washed with PBS and incubated with biotinylated anti-rabbit IgG (1:300, Vector Labs) for 30 min at room temperature, then with the ABC kit (Vector Labs) for 30 min at room temperature. Sections were developed using 3,3′-diaminobenzidine (DAB, Vector Labs), counterstained with hematoxylin, and mounted with Permount. Images were obtained on a Philips Ultrafast Scanner.
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9

Immunofluorescence Staining Protocol

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Transfected cells were fixed in 4% paraformaldehyde for 15 min and permeabilized in 0.1% Triton X-100 for 5 min. Samples were washed three times with 1% PBST, followed by blocking with protein block serum-free (Dako) for 1 h and incubation with ANTI-FLAG M2 (1:500; F1804, SIGMA)/anti-firefly luciferase antibody (1:200; ab21176, Abcam) overnight at 4 °C. Following three washes with PBST, the samples were incubated with Alexa Fluor 568-conjugated goat anti-mouse IgG antibodies (1:500; Invitrogen)/Alexa Fluor 488-conjugated goat anti-rabbit IgG antibodies (1:500; Invitrogen) and DAPI (1:500; Dojindo) for 1 hour at RT to visualize the antigens and nuclei. These were mounted with Ultramount aqueous permanent mounting medium (DakoCytomation) and visualized under a confocal fluorescent microscope (LSM700, Zeiss).
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10

Quantification of Luciferase Expression in LNCaP-AR-luc Cells

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LNCaP-AR-luc cells were enzymatically dissociated into single cells by trypsin treatment and fixed in 2% paraformaldehyde for 20 min at room temperature. The cells were permeablized in 0.5% Tween 20 for 20 min, blocked with 10% fetal bovine serum, incubated for 30 min. with a rabbit anti-luciferase antibody (ab21176, 1:500 dilution, Abcam) at room temperature. The cells were washed three times and incubated with a fluorochrome-labeled secondary antibody (1:500) (Fluorescent Goat Anti-Rabbit IgG Kit; FI-1200, Vector Labs, Burlingame, CA) in the dark for 30 min. The cells were washed three times, resuspended in ice cold PBS containing 0.5% Tween 20, and stored at 4°C in the dark. Fluorescence was measured using a BD LSRII flow cytometer (BD Biosciences) and data were analyzed with FACSDiva software (version 8.0.2; BD Biosciences).
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