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12 protocols using 13 s hode

1

Intranasal 13-S-HODE and Dexamethasone Administration

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13-S-HODE (Cayman, Michigan,USA) or VEH (50% ethanol) was instilled to the nasal openings of each isoflurane anesthetized mouse. Based on our previous publication21 (link) we have selected the dose of 0.6 mg/kg or 2.02 mM for each mouse. 13-S-HODE was administered intranasally on days 24, 26 and 28 as shown in Fig. 1A. Dexamethasone (Sigma-Aldrich, MO, USA), dissolved in 50% ethanol, was given orally (0.75 mg/kg) to mice from day 24 to 28 as shown in Fig. 1A. PDTC (Sigma-Aldrich, USA) was dissolved in DNAase and RNAase free H2O, and was administered intraperitoneally into mouse (50 mg/kg) on days 24, 26 and 28, 2 hrs after the administration of HODE (Figs 1A and 5A).
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2

Bronchial Epithelial Cell Response to 13-S-HODE

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Human bronchial epithelial cells (Beas-2B) were obtained (ATCC, Manassas, VA, USA), maintained in HAM’s F12 (Sigma-Aldrich, MO, USA) with 10% fetal bovine serum (FBS). The cells were pretreated with dexamethasone (10−6 M, Sigma, MO, USA) for 3 hrs before stimulating with vehicle (ethanol) or 13-S-HODE (35 μM, Cayman, Ann Arbor, Michigan, USA) for 16 hrs. These cells were harvested for further experiments and supernatants were stored for cytokine assays.
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3

Lipid Mediator Analysis Protocol

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ML351, PD146176, 25-hydroxycholesterol, 15(S)-HETE, 13(S)-HODE, and 17(S)-HDHA were purchased from Cayman Chemical (Ann Arbor, MI, USA), Bafilomycin A1, Methyl-β-cyclodextrin from Sigma-Aldrich (Steinheim, Germany), CC chemokine receptor 4 (CCR4) antagonist from EMD Millipore Corp. (Billerica, MA, USA), and recombinant human IL-4 from PeproTech (Hamburg, Germany). Primers were purchased from http://Biomers.net GmbH (Ulm, Germany) and their sequences are available on request. All chemicals were of the highest grade of purity and commercially available.
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4

Lipid Extraction and Quantification

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All chemicals and tissue culture reagents were purchased from Sigma-Aldrich (St. Louis, MO, USA). Cell culture medium, RPMI 1640 and fetal bovine serum (FBS) were purchased from Invitrogen Corporation (Carlsbad, CA). High-performance liquid chromatography (HPLC)-grade reagents were purchased from Fisher Chemical (Pittsburgh, PA). Free fatty acid, cholesterol ester, triglyceride, phospholipid, rapeseed oil methyl ester standards, as well as boron trifluoride-methanol, potassium chloride, sodium chloride, perchloric and trichloroacetic acids were purchased from Sigma-Aldrich (St. Louis, MO). The HPLC standards, (+/−) 5-HETE and 13(S)-HODE) were purchased from Cayman Chemical Co. (Ann Arbor, MI).
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5

Bioactive Lipid Mediator Analysis

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Vasicine, vasicinone, isoorientin, isovitexin, vitexin, apigenin, 12,13-DiHOME, 9,10-DiHOME, 13(S)-HODE, 9(S)-HODE, 13-oxoODE, 9-oxoODE, 12,13-EpOME and 9,10-EpOME, 9-HpODE, and 7-ethoxyresorufin were purchased from Cayman Chemical (Ann Arbor, MI, USA). AITC, ionomycin calcium salt, HC-030039, and A967079 were from Sigma-Aldrich (St. Louis, MO, USA). DMSO was from Fisher Scientific (Waltham, MA, USA).
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6

Optimized Fatty Acid Extraction and Analysis

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All chemicals including Dox and tissue culture reagents were purchased from Sigma-Aldrich (St. Louis, MO, USA). Cell culture medium, RPMI 1640 and fetal bovine serum (FBS) were purchased from Invitrogen Corporation (Carlsbad, CA). High-performance liquid chromatography (HPLC)-grade reagents were purchased from Fisher Chemical (Pittsburgh, PA). Free fatty acid, rapeseed oil methyl ester standards, as well as boron trifluoride-methanol, potassium chloride, sodium chloride, perchloric and trichloroacetic acids were purchased from Sigma-Aldrich. The HPLC standards, (+/−) 5-HETE and 13(S)-HODE were purchased from Cayman Chemical Co. (Ann Arbor, MI).
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7

Binding Affinities of PPARγ Mutants

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Binding affinities of PPARγ LBD WT and mutants (R280C, C285Y, Q286E, Q286P, F287Y, R288C, R288H and S289C) for 15-deoxy-∆12,14-prostaglandin J2 (15d-PGJ2, Sigma Aldrich) and 13S-hydroxy-9Z,11E-octadecadienoic acid (13S-HODE, Cayman Chemical, Ann Arbor, MI, USA) were measured using a MicroCal ITC200 system (Malvern Instruments, Worcestershire, UK). All the measurements were conducted in the buffer of PBS pH 7.2 at 25 °C. The ligands filled in the syringe were titrated into the proteins in the cell using 19 injections of 2 μL and an initial injection of 0.4 μL with 150 s equilibration between injections. The final protein concentrations of PPARγ LBD WT and mutants were 60 μM for 15d-PGJ2 at the ligand concentration of 900 μM and 45 μM for 13S-HODE at the ligand concentration of 900 μM, respectively. The obtained data were analyzed using Origin 7.0 software.
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8

Evaluating 13(S)-HODE Effects on Cell Proliferation

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The cells were seeded into a 96-well plate (3 × 103/well). Twenty-four hours later, the cells were treated with 13(S)-HODE (#38610, Cayman) or dissolvent in 5% dialyzed FBS of the medium. The cell proliferation and viability were analyzed at 0, 24, 48, and 72 hours after treatment unless otherwise specified using MTT assay.
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9

Quantification of Oxylipins and cAMP

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OTA standard (purity ≥ 99%) was purchased from Fermentek (Jerusalem, Israel). cAMP standard (purity ≥ 98%) was purchased from Solar Bio (Beijing China). Oxylipins 9(S)-HODE (purity ≥ 98%), 13(S)-HODE (purity ≥ 98%), and PGE2 (purity ≥ 98%) were purchased from Cayman Chemical (Michigan, USA). The stock solutions were dissolved in ethanol and stored at − 80 °C, and then diluted with ethanol to working solutions before analysis. Other conventional solvents used in this experiment are chromatographic purity, all purchased from Merck (Darmstadt, Germany).
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10

Tumor Perfusion and Metabolic Measurements

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When (SR−) MCF-7 human breast cancer xenografts reached 5–6 gm estimated tumor weight, animals were prepared for arterial-venous difference measurements of total fatty acids (TFAs), LA, 13-HODE, glucose, lactate, pO2, CO2 and pH between 0600 and 1000 hrs when endogenous melatonin levels were low. Tissue-isolated xenografts were perfused in situ with rat donor whole-blood to which either synthetic melatonin (Sigma, St. Louis, MO) and/or 13(S)-HODE (Cayman Chemicals, Ann Arbor, MI), or MT1/MT2 melatonin receptor antagonist S20928 (a generous gift from Institute de Recherches Internationales Servier, Courbevoie Cedex, France) was added as previously described [9] (link), [10] (link), [12] (link), [28] (link). Sets (3 or 4 tumors/perfusion) of tissue-isolated human breast cancer xenografts were perfused in situ for 1 hr as previously described [9] (link), [10] (link), [12] (link), [28] (link) with whole-blood collected from donor rats. Incorporation of [3H]thymidine into tumor DNA was initiated 20 minutes prior to the end of each perfusion by injecting 20 µl of physiological saline containing 2 µCi [methyl-3H]thymidine/gm (New England Nuclear, Perkin Elmer, Boston, MA) estimated tumor weight into the arterial catheter. At the completion of each perfusion, tumors were freeze-clamped under liquid nitrogen, weighed and store at −85°C until analysis.
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