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16 protocols using prl cmv renilla

1

Engineered Plasmids for RIP140 Study

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The pRL-CMV-renilla and pGL vectors were from Promega (Charbonnieres, France). pEF-cmyc-RIP140 and pEGFP-RIP140 were previously described [26 (link),27 (link)]. pEF-cmyc-RIPMSI was generated using QuikChange (Agilent Technologies, Santa Clara, CA, USA). pEF-cmyc-RIPMSI was digested with AflII and EcoRV enzymes, and the resulting insert was cloned into pEGFP-RIP140 to create pEGFP-RIPMSI. Green Fluorescent Protein (GFP), GFP-RIP140 and GFP-RIP140MSI were PCR-amplified and cloned in the pTRIPZ vector previously digested with AgeI and MluI to create pTRIPZ-GFP, pTRIPZ-RIP140 and pTRIPZ-RIPMSI, respectively. All the engineered PCR constructs were sequenced.
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2

Plasmid Constructs for YAP Isoform 3 Studies

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pEGFP C3-YAP2 and pEGFP C3-YAP-DeltaC plasmids were Addgene plasmids #19055 and #21126 (deposited by Marius Sudol). pCMV-Flag YAP2 5SA was Addgene plasmid #27371 (deposited by Kun-Liang Guan). pEGFP C3-YAP2 3YF and pCMV-Flag YAP2 5SA 3YF were created using pEGFP C3-YAP2 and pCMV-Flag YAP2 5SA, respectively, by mutating the three tyrosine residues in question (Y375F Y391F and Y428F). Note the YAP constructs are generated using mRNA isoform 3. Site directed mutagenesis was performed by Creative Biogene. pEGFP-N1 α-actinin 1 was Addgene plasmid #11908 (deposited by Carol Otey). pNL2.2 - 8×TEAD and pRL-CMV Renilla were from Promega. All plasmids were transfected using Lipofectamine 3000 (Invitrogen). To constitutively overexpress human PDLIM7, the PDLIM7 (isoform 1) open-reading frame (ORF) was subcloned from the corresponding entry vector (Dharmacon; clone 3562 for PDLIM7 isoform 1) into the destination vector pcDNA-PDEST47 (Invitrogen, 12281010) by recombination using the Gateway LR clonase enzyme mix (Invitrogen,11791).
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3

Bcl-w and Sox2 3' UTR Luciferase Assay

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pGL3UC vector constructs kindly was provided by V.N. Kim (School of Biological Sciences, Seoul National University, Korea).49 (link) A DNA fragment of human Bcl-w 3′ UTR containing the putative miR-340-5p binding site (88 bp) was constructed and cloned into pGL3UC. The nucleotide sequences of primers for the amplification of the Bcl-w 3′ UTRs were 5′- AAATGCTCTAGAGCCTATATTCCTGTATTTTTATTTAATAATTTATAAA-3′ (forward) and 5′-ACACGGAATTCCAAAAATAAAAGTCAAATGAACTTGGTATTTATAAATT-3′ (reverse), and the Sox2 3′ UTRs were 5′-AAAAGCTCTAGAGCGGGCAAAAGTTTTAGACT GTACTAAATTTTATAAC-3′ (forward) and 5′-CCTGGGAATTCCCATGGCCATTTTTGCT TTTAACAGTAAGTTATAAAAT-3′ (reverse), which contained the binding site of miR-340-5p (TTTATA). The vector of mutant type is constructed out of “AATA” that have site-directed mutagenesis of the Bcl-w and Sox2 3′ UTR for binding of miR-340-5p. Then pGL3UC vector were cut by XbaI and EcoRI restriction enzymes, and fragment of PCR product was ligated into pGL3UC vector.
U251 cells were transfected with reporter plasmid containing Bcl-w or Sox2 (200 ng), pRL-CMV-Renilla (Promega, Madison, WI, USA) plasmid (1 ng), and miR-340-5p using Lipofectamine 2000 (Thermo Fisher Scientific, Waltham, MA, USA) in 24-well plates. Luciferase reporter system (Promega) was performed according to manufacturer’s protocol. Renilla luciferase activity was used as normalization.
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4

Construction of Inducible RIP140 Fusion Plasmids

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pRL-CMV-renilla and pGL promoters were obtained from Promega (Charbonnieres, France). pEF-cmyc-RIP140 was previously described[27 (link)]. pEGFP-RIP140 was a kind gift of Dr. Johanna Zilliacus, (Karolinska Institutet, Huddinge, Sweden)[28 (link)]. pEF-cmyc-RIPMSI was generated by mutagenesis using the QuikChange® Site-Directed Mutagenesis Kit (Stratagene). pEF-cmyc-RIPMSI was digested with AflII and EcoRV enzymes, and the resulting insert was cloned into pEGFP-RIP140 to create pEGFP-RIPMSI. GFP, GFP-RIP140, and GFP-RIPMSI were PCR amplified and cloned into pTRIPZ previously digested with AgeI and MluI to create pTRIPZ-GFP, pTRIPZ-RIP140 and pTRIPZ-RIPMSI, respectively. All the engineered PCR constructs were sequenced.
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5

EGFR Promoter Luciferase Assay

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U-87 MG cells were co-transfected with a reporter plasmid (GV238 vector) containing the EGFR promoter (GeneChem, Shanghai, China) and an expression plasmid encoding Flag-Kindlin-2 using Lipofectamine 2000 (Invitrogen). We co-transfected the cells with pRL-CMV Renilla (Promega) to standardize the transfection efficiency. Luciferase activity was measured using the Dual-Luciferase reporter assay (Promega) and the manufacturer's protocol. Photinus luciferase activity was measured relative to Renilla.
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6

Overexpression and Knockdown Constructs

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8xGTIIC-luciferase was a gift from Stefano Piccolo (Addgene plasmid #34615). The pRL-CMV (Renilla, #E2261) was purchased from Promega (Madison, WI, USA). Smart pool siRNAs against RhoBTB2 were obtained from Dharmacon. shRNAs against RhoBTB2 were expressed from the pSuper expression vector (Brummelkamp 2002 (link)) with target sequences as listed in the Supplemental Table 1. RASG12V and LATS2 shRNA constructs were described previously (Voorhoeve et al. 2006 (link)).
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7

Dual-Luciferase Reporter Assay for miRNA

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U251 cell was seeded into 24-well culture plates, reached to around 50% confluency and then co-transfected for 48 hrs with reporter plasmid (200 ng), pRL-CMV-Renilla (Promega, Madison, WI) plasmid (1 ng) and miRNA using Lipopectamine 2000 (Invitrogen). Luciferase activity was measured using dual-luciferase reporter Assay system (Promega) according to the manufacturer's instructions [22 (link)] and normalized to Renilla luciferase activity. All experiments were performed in triplicates.
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8

Quantifying STAT3 Transcriptional Activity

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1 μg per confluent 6-well plate of a STAT3 luciferase reporter designed to quantify the transcriptional activity of STAT3 [pGL4.47 luc2P-SIE (Promega); along with 0.5 μg pRL-CMV-Renilla (Promega)] was transiently transfected into RINm5F cells using Lipofectamine2000 (Invitrogen, Karlsruhe, Germany) according to the manufacturer’s instructions. After 4 h of transfection, medium was exchanged and cells were cultivated for further experiments as outlined in the figure legends. Thereafter, cells were harvested and luciferase activity was determined using the dual luciferase reporter assay system (Promega) and an automated chemiluminescence detector (Glomax, 96 microplate luminometer, Promega).
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9

Transcriptional Regulation in Breast Cancer Cells

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shCtrl and shCoR #1 MDA-MB-231 cells were plated at a density of 50,000 cell/well on 24-well plates 24 hr prior to transfection. Cells were transfected using Fugene 6HD (Promega) with 400ng of either pMCP-luc (CCL2 promoter in pGL3-basic), which was a gift from Alexander Dent (Addgene plasmid #40324) [34 ] or VEGF-luc (VEGF promoter in pGL2-basic), which was a gift from Patricia D’Amore (Addgene plasmid #29667) [35 (link)] and 50ng of pRL-CMV-Renilla (Promega). After 48 hr, cell lysates were harvested and assayed with the Dual-Glo luciferase assay (Promega) according to the manufacturer’s instructions on a Glomax Multi+ plate reader (Promega). All experiments were conducted in triplicate with 3 biological replicates.
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10

Luciferase Reporter Assay for miRNA Function

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Cell reached to around 50% confluency in 24-well culture plates and then co-transfected for 48 hours with reporter plasmid (200 ng), pRL-CMV-Renilla (Promega, Madison, WI, USA) plasmid (1 ng) and miRNA using Lipofectamine 2000 (Thermo Fisher Scientific, Grand Island, NY, USA). Luciferase activity was measured using dual-luciferase reporter Assay system (Promega, Madison, WI, USA) according to the manufacturer's instructions and normalized to Renilla luciferase activity [53 ]. All experiments were performed in triplicate.
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