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15 protocols using cd3e fitc

1

Multiparametric Flow Cytometry Analysis

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Splenocytes were resuspended in 100 µL of PBS, and cells were stained with anti-mouse CD11c-fluorescein isothiocyanate (FITC), CD83-phycoerythrin (PE), CD86-PE, MHC-I-PE, MHC-II-PE, CD3e-FITC, CD4-PE, CD3e-PE, and CD8-PE (eBioscience, San Diego, CA, USA) for 40 min at 4°C in the dark. A flow cytometer (Beckman Coulter Inc., Brea, CA, USA) was used for cell fluorescence analysis. All samples were stained using the above strategy and subjected to flow cytometric analysis. All labeled cells were analyzed on a FACS Aria III flow cytometer (BD Biosciences), and data were analyzed using CellQuest software (BD Biosciences, Franklin Lakes, NJ, USA).
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2

Detailed Flow Cytometry Immunophenotyping

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Mouse thymocytes and splenocytes were isolated in RPMI containing 5% fetal calf serum, followed by red blood cell depletion using the ACK lysing buffer (Gibco). Flow cytometric analysis was performed on cells according to a previously described procedure (Jiang et al., 2011 (link)). Antibodies used for analyses: CD3 pacific blue (BD, clone 500A2, 558214), CD8 APC-Cy7 (BD, clone 53-6.7, Cat. No. 557654), CD4 PE (BD, clone GK1.5, Cat. No. 553730), CD80 FITC (BD, Cat. No. 553768), mouse Vβ TCR screen panel (BD, Cat. No. No. 557004), CD25 APC (eBioscience, clone PC61.5, Cat. No. 17-0251-82), Foxp3 FITC (eBioscience, clone FJK16a, Cat. No. 11-5773-82), CD3e FITC (eBioscience, clone 145-2C11, 11-0031-82), CD274 PE (eBioscience, B7-H1, PD-L1, clone MIH5, 12-5982-81), ly-6G (Gr-1) Alexa Fluor 700 (eBioscience, clone RB6-8c5, 56-5931-80), CD11b PE-Cy7 (eBioscience, clone M1/70, 25-0112-81), CD11c 780 (eBioscience, clone N418, 47-0114-80), CD49f (intergrin alpha 6) PE-Cyanine 7 (eBioscience, clone GOH3, Cat. No. 25-0495-80), CD45.1 PE-Cy7 (eBioscience, clone A20, 25-0453-82), CD45.2 eFluor 450 (eBioscience, clone 104, Cat# 48-0454-82), and FITC conjugated UEA1 (Vector, Cat. No. FL-1061). Labeled cells were analyzed on a LSR-II Flow Cytometer (Becton Dickinson). Data were analyzed using FlowJo software.
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3

Spleen Cell Immunophenotyping by Flow Cytometry

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Mice were sacrificed and spleen cells were collected. Synthetic peptide TMR (Tetramethylrhodamine)-Zfra1–31 was made (Genemed Synthesis; excitation 550 nm, emission 573 nm). Specific antibodies for spleen cell staining were from eBioscience, including CD3e FITC (excitation 488 nm, emission 518 nm), CD27 FITC (excitation 488 nm, emission 518 nm), CD19 eFluor 450 (excitation 405 nm, emission 450 nm), mouse CD19 PerCP-Cyanine5.5 (excitation 488 nm), and mouse F4/80 antigen FITC (excitation 488 nm). Flow cytometry (FACSCalibur BD) analysis and cell sorting (FACSAria BD) were performed to analyze spleen cell populations. Data were analyzed by the WinMDI 2.8 program.
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4

Flow Cytometric Characterization of BMDCs

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The BMDCs were incubated with mouse Fc block (Miltenyi Biotec, Bergisch Gladbach, Germany) at 4°. Fluorochrome‐labelled monoclonal antibodies used in the experiments included anti‐mouse CD80‐allophycocyanin (APC), CD86‐phycoerythrin (PE), MHC‐II‐PE, CD11c‐APC, CD40‐APC, CD83‐PE, CCR7‐PE, CCR5‐APC, CXCR3‐APC, programmed death‐ligand 1 (PD‐L1) ‐PE, CD3e‐FITC, CD4‐PE, CD8‐APC, IL‐17‐PE, IL‐10‐PE, interferon‐γ (IFN‐γ) ‐PE‐Cy7, Foxp3‐APC and CD25‐PE (eBioscience) and their corresponding isotypic controls. For intracellular cytokine staining, cells were pre‐treated with Golgi Stop (BD Biosciences, Franklin Lakes, NJ) and were then stained with fluorochrome‐labelled surface staining monoclonal antibodies or isotypic control for 30 min. A Cytofix Cytoperm kit (BD Biosciences) was then used to permeabilize and fix cells at 4° for another 30 min. Perm wash buffer was used to wash the processed cells before staining them with anti‐IFN‐γ, anti‐IL‐17 and anti‐IL‐10 monoclonal antibodies and isotypic controls for 30 min at 4°. Anti‐mouse Foxp3 staining set APC (eBioscience) was used for Foxp3 immunostaining. Data were captured by flow cytometry (Beckman Coulter, Brea, CA) and analysed using the flowjo software (FlowJo, Ashland, OR).
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5

Flow Cytometry Analysis of Dendritic Cells

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All antibodies conjugated to fluorochromes for flow cytometry were purchased from eBiosciences (San Diego, CA, USA), those including the following: MHCII (I-A/I-E)-APC, CD86 (B7-2)-APC, CD11c-FITC, CD3e-FITC, and CD71 (transferring receptor)-APC. Cultured BM-derived cells were harvested and labeled with two antibodies (anti-CD11c and anti-MHCII or anti-CD86), and then analyzed by flow cytometry.
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6

Multiparameter Flow Cytometry Analysis of Hematopoietic Stem and Progenitor Cells

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Cells were stained and analyzed on either a FACSCalibur II or LSR II (Becton Dickinson, San Jose, CA). The following anti-mouse antibodies were used for flow cytometry analysis: B220-PE, CD3e-FITC, CD11b-APC, Gr-1-APC-Cy7, CD48-Pacific Blue, CD150-PE-Cy7, CD34, c-Kit-APC, Sca-1-PE, FcγR-PE, CD45.1-Brilliant Violet 570, and CD45.2-Alexa Fluor 700 (all from eBiosciences, San Diego, CA). Cell sorting was performed using a FACS Aria (Becton Dickinson, San Jose, CA). Antibodies for Annexin V and Ki-67 assays were used as per manufacturer’s protocol (Becton Dickinson, San Jose, CA). Gating strategy for HSPC fractions are as follows: (1) LSK: LineageNegCkit+Sca1+; (2) CMP: LineageNegCkit+Sca1Neg CD34+FcγRIIIlow; (3) GMP: LineageNegCkit+Sca1Neg CD34+FcγRIIIhigh; (4) MEP: LineageNegCkit+Sca1Neg CD34NegFcγRIIINeg; (5) CLP: LineageNeg IL7RαhighCkit+Sca1low; ProB Frac A: B220lowCD43HighBP1NegHSANeg; ProB Frac B: B220lowCD43HighBP1NegHSAPos; ProB Frac C: B220lowCD43HighBP1HighHSAPos; ProB Frac D: B220HighCD43NegIgMNeg; ProB Frac E: B220HighCD43NegIgMMid; ProB Frac F: B220High++CD43NegIgMHigh/Mid.
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7

Immune Cell Phenotyping of Vaccinated Mice

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Splenocytes of three mice vaccinated by KP-LC and 3 mice vaccinated by PBS were stained with CD3e (FITC) (eBioscience, 11-0031-86), CD4 (APC) (eBioscience, 17-0041-82), CD8a (PE) (eBioscience, 12-0081-85), CD44 (eFluor 450) (eBioscience, 48-0441-80), CD62L (PerCP-Cyanine5.5) (eBioscience, 4300748) for 30 min at 4°C. After washing, stained cells were analyzed on an ACEA NovoCyte flow cytometer.
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8

Immune Cell Profiling of Murine Tumors

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Orthotopic Met-1 or AT3 tumours were isolated, dissociated into single cell suspension, and incubated for 15 min with anti-mouse CD16/CD32 to reduce non-specific staining. Infiltration of immune cells into tumours was analysed by staining with the following anti-mouse antibodies: CD45-PE/Cy7 (eBioscience, 25-0451-82, diluted 1:200), CD45-BV570 (Biolegend, 103136, diluted 1:100), CD3e-FITC (eBioscience, 14-0031-82, diluted 1:100), CD4-APC/Cy7 (Biolegend, 100414, diluted 1:100), anti-CD8a-APC (eBioscience, 17-0081-82, diluted 1:100), CD11b-PerCP/Cy5.5 (eBioscience; 45-0112-82, diluted 1:100), F4/80-APC (eBioscience, 17-4801-82, diluted 1:50), Ly-6G/Ly-6C (Gr-1)-APC/Cy7 (Biolegend, 108424, diluted 1:100), Ly-6G-APC (Biolegend, 127614, diluted 1:200), Ly-6C-FITC (Biolegend, 128006, diluted 1:200), Ly-6C-BV605 (Biolegend, 128036, diluted 1:200). DAPI was used to exclude dead cells. Acquisition was performed with Beckman-Coulter Gallios flow cytometer and data analysis was done with FlowJo software (version X.0.7).
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9

Multicolor Flow Cytometry Immunophenotyping

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Cell-surface antigens were blocked with Fc Block (20 μg/mL; BD Biosciences) and stained with fluorophore-conjugated antibodies or isotype control antibodies for 1 h. Fluorophore-conjugated primary antibodies used in these studies are F4/80-FITC, CD11c-phycoerythrin, and CD206–Alexa Fluor 647 (eBioscience); CD45-phycoerythrin (BD Biosciences), CD19-FITC (BD Biosciences), CD4-PerCP (eBioscience), CD3e-FITC (eBioscience), CD115–Alexa Fluor 488 (BD Biosciences), and Ly6G–Alexa Fluor 647 (BD Biosciences). After incubation with antibodies, cells were washed and centrifuged at 500 × g for 5 min, resuspended in 1 mL washing buffer, and analyzed on an FACSCalibur using FlowJo 10.0.6 software.
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10

Phenotypic Analysis of Ascites Cells

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Ascites samples from the orthotopic ID8 OC model were spun at 300 g for 10 min to separate cellular and acellular fractions. Ascites cell pellets were incubated for 5 min with 5 mL of red cells lysis buffer (Versalyse lysing solution; #A09777, Beckman Coulter, Villepinte, France) and then washed with PBS. Pelleted cells were suspended in freezing medium (90% FBS/10% DMSO) and kept in liquid nitrogen for subsequent analysis. After thawing, cells were re-suspended in RPMI 1640 medium containing 10% FBS and 0.5% C3H3NaO3. Viable cells were then gated based on forward and side scatter profiles, and equal numbers of viable ascites cells were phenotyped, using the following fluorescent-labeled antibodies: CD3e-FITC (#11-0031-82, Thermo Fisher Scientific), CD45R-APC (#17-0452-82, Thermo Fisher Scientific), CD4-PE (#12-0041-82, Thermo Fisher Scientific) and CD8a-PerCP-Cyanine5.5 (#45-0081-82, Thermo Fisher Scientific) for 20 min, at room temperature. After washing with DPBS (#D8537, Sigma-Aldrich), stained samples were run on a BD Accuri™ C6 cytometer (Beckman Coulter) followed by gating, data analysis and visualization in FlowJoTM (FlowJo LLC, Ashland, OR, USA) software.
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