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Alexa 488 anti rat

Manufactured by Thermo Fisher Scientific
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Alexa Fluor® 488 anti-rat is a fluorescent-labeled secondary antibody that specifically binds to rat primary antibodies. It is designed for use in immunofluorescence techniques such as flow cytometry, immunohistochemistry, and Western blotting.

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8 protocols using alexa 488 anti rat

1

Comprehensive Immunostaining of Retinal Vasculature

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Retinal vasculature and CNV lesions were immunostained with directly conjugated Alexa Fluor 488-Isolectin B4, Alexa Fluor 594-Isolectin B4, or Alexa Fluor 647-Isolectin B4 (Sigma). Endothelial cell junctions and phosphorylated VE-cadherin were stained with anti-VE-cadherin antibody (1:100; BD Rat 555289) and affinity purified rabbit antibodies against VE-cadherin pY658 and pY685 (Orsenigo et al., 2012 (link)). Phosphorylated c-Src was assessed using anti-phospho-Src (Tyr418) Antibody (1:100; Invitrogen Rabbit 44–660G). Secondary antibodies used were Alexa488 anti-Rat (1:500; Invitrogen Donkey A-21208) and Alexa555 anti-Rabbit (1:500; Donkey A-31572). Inflammatory cells were stained with anti-CD45 (1:300; BD Biosciences Goat 553076) and anti-CD68 (1:300; BioRad Rat MCA1957). Secondary antibodies used were Alexa488 anti-Rat (1:500; Invitrogen Donkey A-21208). Alexa555 anti-Goat (1:500; Invitrogen Donkey A-21432).
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2

Immunofluorescence Analysis Protocol

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Immunofluorescence analysis was carried out as previously described (Sabbattini et al., 2007 (link)). Secondary antibodies used for fluorescence detection were Alexa 488–anti-rabbit and Alexa 488–anti-rat (both from Molecular Probes, Eugene, OR). Images were collected by confocal microscopy using a SP5 microscope (Leica Microsystems, Wetzlar, Germany) and LAS-AF software.
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3

Endoglin Immunofluorescence in Murine Liver

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Immediately after sacrifice, mice were perfused with freshly prepared 1% paraformaldehyde (PFA). Liver was excised and fixed in 1% PFA for 12h at 4°C, and 15% and 30% sucrose solution, until the specimens were decanted, and frozen in OCT. Cryosections were incubated with an Ab against endoglin (eBioscience, 14–1051) or rat anti-mouse isotype control (eBioscience, 14–4321, overnight at 4°C. Endoglin was detected following 1 hour incubation with Alexa 488 anti-rat (Molecular Probes #A-11006). All the incubations were done in the presence of 5% goat serum in PBS. Staining was visualized by laser confocal scanning microscopy (TCS-SP2-AOBS; Leica).
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4

Immunostaining of Olfactory Bulb Sections

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We stained free-floating coronal sections of the olfactory bulb from injected mice with primary antibodies: anti-rat Galectin-3 (1:300) and anti-rabbit Iba-1 (1:500, Wako/Nordic labs) with appropriate secondary antibodies Alexa-488 anti-rat, Alexa-647 anti-rabbit (raised in goat, 1:400, Invitrogen). We then analyzed these sections with a confocal laser microscope ZEISS LSM 510 (Switzerland), equipped with Ar and HeNe Lasers.
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5

Immunodetection of Cytoskeletal Proteins

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Primary antibodies used for Western blotting and immunofluorescence staining were mouse anti-K7 (RCK-105; Progen, Heidelberg, Germany), rat anti-K8 and rat anti-K19 (Troma I and Troma III, respectively; Developmental Studies Hybridoma Bank, Iowa, IA, USA), rabbit anti-K8 (273) and rabbit anti-K18 (275; kind gifts from J.E. Eriksson), rabbit anti-K20 (It-Ks 20.10; Epitomics, Burlingame, CA, USA), rat anti-Hsc70 (Enzo Life sciences; Farmingdale, NY, USA), mouse anti-K8 pS74 (LJ4; kind gift from M.B. Omary), rabbit anti-Ki67 (Abcam, Cambridge, MA, USA), rat anti-HSF2 (Abcam) and rabbit anti-IκB-α (Santa Cruz Biotechnology; Dallas, TX, USA). Secondary antibodies used for Western blotting were HRP-conjugated anti-mouse (GE healthcare, Little Chalfont, UK), anti-rat (GE healthcare and Cell Signaling Technology, Danvers, MA, USA) and anti-rabbit (Cell Signaling Technology) IgG antibodies. Secondary antibodies used for immunofluorescence staining were Alexa 488/Alexa 546 anti-mouse, Alexa 488 anti-rat and Alexa 488 anti-rabbit antibodies (Invitrogen, Carlsbad, CA, USA). Nuclei were stained with DRAQ5 (Cell Signaling Technology).
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6

Whole-Mount Immunostaining of Fly Brains

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Immunostaining of whole-mount brains or VNCs was performed as follows: brains or VNCs of 3- to 7-day-old flies were dissected in PBS, fixed in 4% paraformaldehyde (PFA) for 20 min, and subjected to chicken anti-GFP (1:1000, In-vitrogen), rabbit anti-TH (1:1000, Millipore), rat anti-CD8 (1:200, Invitrogen), mouse anti-nc82 (1:25, Developmental Studies Hybridoma Bank), or all four at 4°C for 18–40 hr, followed by incubation with fluorescent Alexa 488 anti-chicken (1:1000, Invitrogen), Alexa 488 anti-rat (1:200, Invitrogen), Alexa 568 anti-rabbit (1:1000, Invitrogen), Alexa 647 anti-mouse (1:1000, Invitrogen), or Cy3 anti-mouse (1:200, Jackson Immunoresearch) secondary antibodies for ~16 hr at 4°C. Brains or VNCs were mounted in Vectashield (Vector Laboratories) or SlowFade Gold using SS8X9-SecureSeal spacers (both Thermo Fisher Scientific). Images were obtained on an LSM510 or LSM700 confocal microscope (Zeiss) with 1-μm- or 3-μm-thick sections under 10x or 25x magnification. MultiColor FlpOut (MCFO) analysis of select driver combinations was performed as described previously (Nern et al., 2015 (link)) using rat anti-FLAG (1:200, Novus Biologicals) and rabbit anti-HA (1:300, Cell Signaling Technology) antibodies.
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7

Whole-Mount Immunostaining of Fly Brains

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Immunostaining of whole-mount brains or VNCs was performed as follows: brains or VNCs of 3- to 7-day-old flies were dissected in PBS, fixed in 4% paraformaldehyde (PFA) for 20 min, and subjected to chicken anti-GFP (1:1000, In-vitrogen), rabbit anti-TH (1:1000, Millipore), rat anti-CD8 (1:200, Invitrogen), mouse anti-nc82 (1:25, Developmental Studies Hybridoma Bank), or all four at 4°C for 18–40 hr, followed by incubation with fluorescent Alexa 488 anti-chicken (1:1000, Invitrogen), Alexa 488 anti-rat (1:200, Invitrogen), Alexa 568 anti-rabbit (1:1000, Invitrogen), Alexa 647 anti-mouse (1:1000, Invitrogen), or Cy3 anti-mouse (1:200, Jackson Immunoresearch) secondary antibodies for ~16 hr at 4°C. Brains or VNCs were mounted in Vectashield (Vector Laboratories) or SlowFade Gold using SS8X9-SecureSeal spacers (both Thermo Fisher Scientific). Images were obtained on an LSM510 or LSM700 confocal microscope (Zeiss) with 1-μm- or 3-μm-thick sections under 10x or 25x magnification. MultiColor FlpOut (MCFO) analysis of select driver combinations was performed as described previously (Nern et al., 2015 (link)) using rat anti-FLAG (1:200, Novus Biologicals) and rabbit anti-HA (1:300, Cell Signaling Technology) antibodies.
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8

Immunocytochemical Detection of BrdU

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Fixed cells were rinsed with 0.1 M phosphate buffered saline (PBS) 3 times then blocked with 10 % normal donkey serum (NDS, Jackson ImmunoResearch, West Grove, PA) and 0.3 % Triton-X 100 (Sigma) in PBS for 30 min. Cells were incubated overnight in primary antibody, rat anti-BrdU (1:500, AbD Serotech, Raleigh NC) in 10 % NDS in PBS at 4 °C. Cells were then rinsed and incubated in secondary antibody, Alexa488 anti-rat (1:200, Invitrogen) in 10 % NDS in PBS. After rinsing, total BrdU+ cells were imaged and quantified using an automated Cellavista microscope system (Hoffman-La Roche, Basel, Switzerland).
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