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4 protocols using irdye 800cw conjugated goat anti mouse secondary antibody

1

Nitrocellulose Transfer Western Blot

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Nitrocellulose transfers (iBlot, Life Technologies) were treated with blocking buffer (LI-COR, Lincoln, NE) and incubated in 0.50 μg/mL primary antibody, washed with 1× TBS and placed in 1:20 000 dilution of IRDye 800CW-conjugated goat-anti-mouse secondary antibody (LI-COR), then imaged on an Odyssey CL× infrared imager (LI-COR).
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2

MET Protein Detection and Quantification

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Total protein was extracted by incubating cell lines in 1x ice-cold cell lysis buffer (Cell Signalling Technology, Boston, MA), spiked with 1 mM PMSF and 1x phosphatase inhibitor cocktail 2 (Sigma, St. Louis, MO) immediately before use according to a previously published protocol (Abdel-Rahman et al. 2010 (link)). Transfer efficiency was assessed by Ponceau S staining (0.1 % (w/v) in 5% acetic acid. After blocking the membranes were incubated separately overnight at 4°C with two monoclonal anti-MET antibodies (1:200, clone D-4: sc-514148, Santa Cruz Biotechnology, US), (1:250, MAB3729: clone-4AT44, Millipore, US) in addition to one polyclonal anti-MET antibody (1:100, C-28: sc-161, Santa Cruz Biotechnology, US). The IRDye 800CW conjugated goat anti-mouse secondary antibody was used at a 1:2000 dilution (LI-COR, US) for the two monoclonal antibodies. The IRDye®) 680RD goat anti-Rabbit IgG secondary antibody was used at a 1:1000 dilution (LI-COR, US) for the polyclonal antibody. The equality of loading was assessed by a rabbit monoclonal antibody for GAPDH (clone 14C10, Cell Signalling Technology). Signals were captured using the Odyssey CLx system along with Image studio™ 5.2 software (LI-COR Biosciences).
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3

Quantitative Protein Analysis of Herpes Virus

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Vero cells (3×106) were seeded in 60-mm dishes and inoculated with 2.5 pfu per cell for 14 hours. The cells were collected by treatment with 5mM EDTA (prepared in 1× PBS) and whole-cell lysates prepared by boiling for 5 minutes in Laemmli sample buffer [92 (link)]. Lysates equivalent to 1×105 cells per lane were resolved by SDS/PAGE (10% gels), and transferred onto nitrocellulose membranes (Millipore). After incubation in blocking buffer [5% Difco skimmed milk (BD Biosciences) in TBST (Tris-buffered saline with 0.2% Tween-20)], the membranes were incubated overnight with mouse monoclonal antibodies against ICP0, glycoproteins gB, gC, gD, gE, and gG, and major capsid protein (VP5) diluted to 1:1,000 in blocking buffer. The membranes were washed in TBST and incubated for 1 hour with IRDye-800CW-conjugated goat anti-mouse secondary antibody (Li-Cor Biosciences) diluted 1:20,000 in blocking buffer. After additional washes with TBST, the proteins of interest were visualized on an Odyssey Infrared Imaging System (Li-Cor Biosciences). Equal loading of the samples was verified by re-probing the membranes with anti-β-actin mouse mAb diluted 1:2,000 in blocking buffer.
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4

EV Protein Expression Analysis

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Cells and isolated EVs were lysed in RIPA buffer (100mM Tris-HCl pH8, 300 mM NaCl, 2% NP-40, 1% sodium deoxycholate, 0.1% SDS) supplemented with Complete Ultra Mini EDTA-free protease inhibitor mixture (1 tablet/10 ml, Roche Applied Science) and HaltTM phosphatase inhibitor cocktail (Thermo Fisher Scientific). 30 μg protein extracts were resolved on a SDS-PAGE gel, transferred to a nitrocellulose membrane, and probed with antibodies recognizing CD63 (sc-5275, Santa Cruz Biotechnology; 0.4 μg/ml) or actin (clone C4, MAB1501, Millipore; 1:500). The blots were developed using IRDye800CW-conjugated goat anti-mouse secondary antibody (926–32210, LI-COR; 1:7000) and the Odyssey IR Imaging system.
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