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6 protocols using tetracycline free fbs

1

Inducible Oncogenic-Dbl MEF Cell Line

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The inducible MEF line used in this study was generated as described previously51 (link). Briefly, the gene encoding oncogenic-Dbl was sub-cloned into vector pTRE-HA (Clontech). Parental MEFs containing the transcriptional transactivator tTA (Clontech) were then co-transfected with the resulting pTRE-HA-onco-Dbl vector along with vector pMET-puro, in a 20:1 ratio. Following puromycin selection (∼3 weeks), colonies were screened for inducible expression of oncogenic-Dbl. Cells were maintained at 37 °C, 5% CO2 atmosphere, in DMEM medium containing 4 mM glutamine (Gibco) and supplemented with 10% (v/v) tetracycline-free FBS (Gibco) and 0.6 μg ml−1 doxycycline. Expression of oncogenic-Dbl was induced by re-plating cells in doxycycline-free medium (10% FBS). Residual doxycycline was removed by replacing the medium (with the appropriate concentration of FBS, and small-molecule inhibitor where relevant) after 5 h. Uninduced control samples were treated in the same way: re-plating followed by media change at 5 h, but with 0.6 μg ml−1 doxycycline present at all times. For glutamine-withdrawal experiments, glutamine-free DMEM medium (Gibco) was supplemented with dialysed FBS (Gibco). Growth medium containing other concentrations of glutamine was prepared by mixing appropriate volumes of DMEM (4 mM glutamine) and glutamine-free DMEM.
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2

Cultivation of hTERT-RPE-1 Cells

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Human hTERT‐RPE‐1 (human retinal epithelial; RRID: CVCL_4388; RPE‐1) cells were grown in Dulbecco's modified Eagle's medium/nutrient mixture F‐12 Ham (DMEM‐F12; Sigma) supplemented with 10% Fetal Bovine Serum (FBS; Gibco) and 100 U/ml Penicillin/Streptomycin (P/S; Gibco) and maintained at 37°C with 5% CO2 atmosphere. Tetracycline‐free FBS (Gibco) was used to grow cells expressing the PLK4 tet‐inducible construct. The FBS was heat inactivated at 56°C water bath for 30 min. RPE‐1 cells were routinely tested for mycoplasma.
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3

Evaluating Neuroprotective Effects of NHK1 in ALS-linked NSC34 Cells

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The NSC34 motor neuronal-like cell lines were used in their neural-precursor form in continuation with our previous work. Cells stably transfected with pTet-ON plasmid (Clontech, Mountain View, CA, USA) harbouring sequences encoding for human SOD1 WT (NSC34-SOD1WT) or G93A mutant (NSC34-SOD1G93A) were a kind gift of prof. Maria Teresa Carrì (University of Tor Vergata, Rome, Italy) [18 (link)]. Cells were cultured in 5% CO2 in DMEM/F12 (Sigma-Aldrich, St. Louis, MO, USA) supplemented with 10% tetracycline-free FBS (GIBCO, Waltham, MA, USA), penicillin/streptomycin antibiotic and 200 µg/mL G418 (Carlo Erba, Milan, Italy) for selection maintenance. The maximal expression of SOD1 proteins was achieved by the addition of 2 µg/mL doxycycline (Sigma-Aldrich) to the medium after 48 h. The parental NSC34 cells (CELLutions Biosystem Inc., Duluth, GA, USA) were used as control and cultured according to the manufacturer’s instructions. NSC34-SOD1WT and NSC34-SOD1G93A cells were plated in 96-well plates (104 cells/well) and kept in a controlled environment (37 °C and 5% CO2). After 24 h from doxycycline induction, 1, 5, 10, or 50 μg/mL of unlabeled NHK1, previously dissolved in DMSO, were diluted in the culture medium and cells were incubated for additional 24 h. Cell viability was assessed by MTT assay [39 (link)]. Parental NSC34 were used as control.
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4

Tetracycline-Inducible SH-SY5Y Cell Line

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A pcDNA6/TR vector (Thermo Fisher Scientific) was introduced into SH-SY5Y cells for high-level expression of the tetracycline repressor protein. pcDNA6/TR vector was linearized with FspI restriction enzyme (NEB), purified with PCR Clean-up (Macherey-Nagel) and used for the transfection of SH-SY5Y cells using Xfect transfection reagent (TaKaRa) according to manufacturer's instructions. For 48 h, cells were exposed to selection medium containing tetracycline-free FBS (Gibco) and blasticidine S at 5 µg mL -1 (Sigma-Aldrich). Single-cell cloning of resistant cells was performed with dilution plating, followed by cell sorting for the homogenous expression of repressor proteins. To test the efficiency of repression, cells were transfected with a plasmid containing eGFP under a Tet operator. As the resulting SH-SY5Y-TR-eGFP cells exhibited no residual eGFP expression upon the addition of 1 µg mL -1 of doxycycline (Sigma-Aldrich), the original SH-SY5Y-TR cells were selected for FlpIn SH-SY5Y-TR-FRT cell line development. To introduce the FRT recombination site into the cells, pFRT/ lacZeo was linearized with ApaI (NEB) restrictase, purified with PCR Clean-up and transfected into SH-SY5Y-TR cells (Xfect, TaKaRa). Forty-eight hours later, cells were subjected to a
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5

Cell Culture Protocols for Various Cell Types

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Erythrocytes cells were depleted from
total mouse splenocytes using red blood cell lysis buffer (Sigma,
cat. R7757). Mouse lymphocytes were cultured in RPMI 1640 (cat. 11875;
Gibco) supplemented with 10% (v/v) inactivated FCS (Gibco), 0.0002%
β-mercaptoethanol final (Sigma, cat. M7522), penicillin 50 units
per liter–streptomycin 50 mg per liter (Sigma, cat. P4333),
1 mM sodium pyruvate final (Gibco, cat. 11360) nonessential amino
acids (Life Technologies, cat. 11140) and 2 mM glutamine (US Biological,
cat. G7120). HEK 293T cells were cultured in Dulbecco’s Modified
Eagle’s Medium supplemented with 10% (v/v) inactivated FBS
(Gibco). Saccharomyces cerevisiae strain W303 was
cultured in YPD medium. Toxoplasma gondii (RH strain)
tachyzoites were grown in human foreskin fibroblasts (HFF) cultured
in Dulbecco’s Modified Eagles Medium (DMEM; Invitrogen) supplemented
with 10% tetracycline-free FBS (HyClone), 2 mM glutamine, 10 mM HEPES
(pH 7.5), and 20 μg/mL gentamicin.
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6

Generating Doxycycline-inducible Cell Lines

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Codon-optimized SKAP genes (Invitrogen, Carlsbad, CA) were PCR amplified and subcloned into a pCDNA5/FRT/TO-EGFP-IRES vector, a modified version35 (link) of the pCDNA5/FRT/TO vector (Invitrogen). Mutations were generated using site-directed mutagenesis. All plasmids were verified by DNA sequencing. Flp-In T-REx HeLa cells used to generate stable doxycycline-inducible cell lines were a gift from S.S. Taylor (University of Manchester, Manchester, England, UK). Flp-In T-REx HeLa host cell lines were maintained in DMEM (PAN Biotech, Aidenbach, Germany) with 10% tetracycline-free FBS (Clontech, Shiga, Japan) supplemented with penicillin and streptomycin (GIBCO, Carlsbad, CA). Flp-In T-REx HeLa expression cell lines were generated as also described elsewhere40 (link). Specifically, Flp-In T-Rex HeLa host cells were cotransfected with pOG44 and pCDNA5/FRT/TO expression plasmid in a ratio of 9:1 using FuGENE transfection agent. After 48 h, Flp-In T-Rex HeLa expression cell lines were put under selection for 2 weeks in DMEM with 10% tetracycline-free FBS supplemented with 250 μg ml−1 hygromycin and 4 μg ml−1 blasticidin (Invitrogen). Resulting colonies were pooled and maintained in DMEM with 10% tetracycline-free FBS supplemented with 250 μg ml−1 hygromycin and 4 μg ml−1 blasticidin (Invitrogen). HeLa cells were maintained in DMEM with 10% tetracycline-free FBS.
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