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11 protocols using glutaraldehyde

1

Electron Microscopy Sample Preparation

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EHTs were fixed in a mixture of 4% paraformaldehyde and 1% glutaraldehyde (Science Services, Germany) in 0.1 M phosphate buffer overnight at 4°C. Samples were rinsed three times in 0.1 M sodium cacodylate buffer (pH 7.2–7.4) and osmicated using 1% osmium tetroxide in cacodylate buffer. Following osmication, the samples were dehydrated using ascending ethanol concentrations, followed by two rinses in propylene oxide. Infiltration of the embedding medium was performed by immersion in a 1:1 mixture of propylene oxide and Epon (Science Services, Germany), followed by neat Epon and hardening at 60°C for 48 h. For light microscopy, semi‐thin sections (0.5 µm) with longitudinal orientation were mounted on glass slides and stained for 1 min with 1% toluidine blue. For electron microscopy, ultra‐thin sections (60 nm) were cut and mounted on copper grids and stained using uranyl acetate and lead citrate. Sections were examined and photographed using an EM902 (Zeiss) electron microscope equipped with a TRS 2K digital camera (A. Tröndle, Moorenweis, Germany).
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2

High-resolution SEM Imaging of Mouse Lymph Nodes

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Terminally ketamine/xylazine/acepromazine-anesthetized mice were transcardially perfused with PB (0.1 M, pH 7.4) and subsequently fixed with 2.5% glutaraldehyde and 2% paraformaldehyde (Science Services) in PB (0.1 M, pH 7.4). LN samples were then dissected and post-fixed in the same buffer for another hour at RT. They were dehydrated in a graded ethanol series of 50%, 70%, 90%, 96% and 100% in H2O for a minimum of 10 min per step and subsequently kept overnight in fresh 100% ethanol at 4 °C. Once in 100% ethanol, samples were dried with a critical point dryer (EM-CPD300, Leica Microsystems), cut in half and coated with a 4-nm layer of platinum using a sputter coater (EM-ACE600, Leica Microsystems). The samples were imaged with a field emission SEM Merlin compact VP (Carl Zeiss) at 3 kV. The signal was detected by an Everhart–Thornley secondary electron detector.
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3

Ultrastructural Analysis of Microglia

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To analyse the ultrastructure of triple labelled microglia, these cells were sorted on a permeable support PET membrane with 1um size pores (ThinCert™ Cell Culture Inserts, Greiner Bio-One) and prepared for electron microscopy. Fixation was performed in 2.5% (vol/vol) glutaraldehyde (Science Services, Munich, Germany) in 0.2 M sodium cacodylate buffer (Merck, Darmstadt, Germany) at 4 °C overnight. Samples were post-fixed in osmium tetroxide (1%, vol/vol, Serva, Heidelberg, Germany) and stained in 2% uranyl acetate (Science Services, Munich, Germany) in 70% ethanol. After dehydration, membranes were embedded in epoxide resin (Araldite, Serva, Heidelberg, Germany). Finally, blocs were used for ultramicrotomy and sections were stained in 0.4% (vol/vol) lead citrate (Merck, Darmstadt, Germany). Samples were analysed using an EM10 electron microscope (Carl Zeiss, Oberkochen, Germany).
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4

Ultrastructural Analysis of Corpus Callosum

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As described above, mice were deeply anesthetized and transcardially perfused with PBS; half of the brain was dissected and immersion‐fixed in 4% PFA and stored at 4°C. Later, the brains were postfixed with 4% formaldehyde (Serva, Heidelberg, Germany), 2.5% glutaraldehyde (Science Services, Munich, Germany), and 0.5% NaCl in phosphate buffer pH 7.4 17. Finally, the corpus callosum was postfixed with 2% OsO4 (Science Services) in 0.1 M phosphate buffer pH 7.3 and embedded in EPON (Serva) after dehydration with ethanol and propylene oxide. EPON blocks with embedded tissue were then trimmed, using a Leica EM TRIM (Leica, Vienna, Austria), to the size of the corpus callosum. In the following, ultrathin sections were stained with an aqueous solution of 4% uranyl acetate followed by lead citrate 18. The pictures were taken in an unbiased random fashion with a Zeiss EM900 electron microscope (Zeiss, Oberkochen, Germany) using a side‐mounted 2k CCD camera (TRS, Waakirchen, Germany). Counting of myelinated and demyelinated axons was performed using NIH ImageJ software (National Institutes of Health, Bethesda, MD, USA); a total area of 10*784 μm2 = 7840 μm2 was analyzed per mouse and every axon counted. The g ratio was calculated as the ratio between the number of demyelinated axons and the number of myelinated axons. Counting was performed on groups of n = 5 mice.
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5

Transmission Electron Microscopy of Extracellular Vesicles

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EV‐rich fractions (8–9) were subjected to transmission electron microscopy to assess the presence and morphology of EV. A drop (3 µL) of sample was adhered to pre‐coated formvar/carbon/glow discharged 100 mesh copper‐palladium grids for 20 min. Grids were fixed with 2% formaldehyde (Science Services) in 0.1 m phosphate buffer for 20 min, washed with sterile water and stained with 2% uranyl acetate for 5 min. For immunogold labeling, after fixation, the grids were immersed in 50 × 10−3 m glycine in PBS for 15 min and blocked for 10 min with 10% fetal calf serum (FCS) in PBS. Without rinsing, the grids were immediately placed into the primary antibody (1:200 diluted in 5% FCS in PBS, anti‐CD63 ab59479, Abcam) for 30 min at RT. As control, some of the grids were not exposed to the primary antibody. Grids were rinsed with 0.5% FCS in PBS and incubated with 12 nm colloidal gold‐AffiniPure goat‐anti‐mouse IgG secondary antibody (1:20 diluted in 5% FCS in PBS, 115‐205‐146, Jackson Immunoresearch) for 30 min at RT. The grids were rinsed with PBS and post‐fixed in 1% glutaraldehyde (Science Services) for 5 min. After rinsing in distilled water, the grids were stained using 2% uranyl acetate for 5 min. Grids were examined using electron microscopy (FEI Tecnai G2 Spirit BioTWIN operating at 120 keV equipped with an Olympus‐SIS Veleta CCD Camera).
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6

Fluorescence Microscopy Preparation for FIB/SEM

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For FIB/SEM experiments, laser marked slides were used (LASERMarking, Munich, Germany) and the cells in a proliferative phase were allowed to attach to them in a silicon anaerobic chamber at 37 °C. Slides were rinsed with PBS, pH 7.2, and immediately fixed with 2.5% (v/v) glutaraldehyde (Science Services GmbH, München) in 75 mM cacodylate (Sigma-Aldrich), 75 mM NaCl, 2 mM MgCl2 for 30 min, followed by 3 washing steps in cacodylate buffer. Cells were stained with DAPI, sealed with a coverslip and Fixogum (Marabu GmbH & Co. KG, Tamm, Germany) to prevent drying during LM investigation on Zeiss Axiophot fluorescence light microscope. The positions of cells in the desired stage of mitosis (ROIs) were marked on a template, with the same coordinates. For documentation, epifluorescence, phase contrast, and DIC images were taken in different magnifications (objective × 5, × 10, × 40), and these were sufficient to followingly retrieve the ROIs in SEM.
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7

Ultrastructural Analysis of Mitochondria

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Animal livers and isolated mitochondria were fixed with 2.5% glutaraldehyde (Science Services GmbH), postfixed with 1% osmium tetroxide, dehydrated with ethanol and propylene oxide, and were embedded in epoxy resin. Sixty-nanometer sections were cut using the Leica EM UC7 microtome (Leica Biosystems) or the Reichert-Jung Ultracut E microtome (now Leica Biosystems). Ultrathin sections were negative-stained with uranyl acetate (Uranyless) and lead citrate. Images were acquired using either a FEI Tecnai-12 electron microscope equipped with a VELETTA CCD digital camera (FEI, Eindhoven, The Netherlands) or using a Jeol 1200 EXII electron microscope (Akishima, Tokyo, Japan) equipped with a KeenViewII digital camera (Olympus, Hamburg, Germany) and processed with the iTEM software package (anlySISFive; Olympus).
For structural analyses, mitochondria were grouped in normally structured mitochondria of the “condensed type”59 (link) or in altered mitochondria with marked membrane detachments, matrix condensations, and ballooned cristae. A total of 350–750 mitochondria were included per group of animals.
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8

Electron Microscopy of Tissue Samples

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Electron microscopy (EM) images were obtained in collaboration with the Institute of Pathology, University Hospital Tübingen, Germany. Tissue samples were fixed with 2.5% glutaraldehyde (Science Services, Munich, Germany) in cacodylate buffer (Merck, Darmstadt, Germany) at 4 °C overnight. Thereafter, samples were embedded in araldite (Serva, Heidelberg, Germany), and ultrathin sections were cut using a Leica ultramicrotome (Leica, Wetzlar, Germany). Sections were analyzed in a Zeiss EM-10 transmission electron microscope (Zeiss, Oberkochen, Germany).
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9

Electron Microscopy Sample Preparation

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EHTs were fixed in a mixture of 4% paraformaldehyde and 1% glutaraldehyde (Science Services, Germany) in 0.1 M phosphate buffer overnight at 4 °C. Samples were rinsed three times in 0.1 M sodium cacodylate buffer (pH 7.2–7.4) and osmicated using 1% osmium tetroxide in cacodylate buffer. Following osmication, the samples were dehydrated using ascending ethanol concentrations, followed by two rinses in propylene oxide. Infiltration of the embedding medium was performed by immersion in a 1:1 mixture of propylene oxide and Epon (Science Services, Germany), followed by neat Epon and hardening at 60 °C for 48 h. For light microscopy, semi-thin sections (0.5 μm) with longitudinal orientation were mounted on glass slides and stained for 1 min with 1% toluidine blue. For electron microscopy, ultra-thin sections (60 nm) were cut and mounted on copper grids and stained using uranyl acetate and lead citrate. Sections were examined and photographed using an EM902 (Zeiss) electron microscope equipped with a TRS 2K digital camera (A. Tröndle, Moorenweis, Germany).
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10

Tissue Fixation and Embedding for TEM

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Tissue samples were fixed with 2.5% glutaraldehyde (Science Services, Munich, Germany) in cacodylate buffer (pH 7.4; Merck-Millipore, Darmstadt, Germany) at 4C overnight as described previously (Noell et al., 2012) (link). Thereafter, samples were embedded in Araldite (Serva, Heidelberg, Germany), and ultrathin sections were cut using a Leica ultramicrotome (Leica, Wetzlar, Germany) and analyzed using a Zeiss EM-10 transmission electron microscope (Zeiss, Oberkochen, Germany).
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