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25 protocols using powerwave xs2 plate reader

1

Adenylosuccinate Lyase Enzyme Assay

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Tissue samples were homogenized in 300 mM sucrose, 10 mM Tris pH 7.4, 10 mM EDTA using a PTFE tissue grinder and mixer motor. Samples were centrifuged at 4°C for 30 min in a microfuge at maximum speed. Supernatant was collected and stored at −70°C. Protein concentration was determined using a bicinchoninic acid assay kit (Sigma) and a BioTek PowerWave XS2 plate reader, measuring absorbance at λ 562 nm. Absorbance values were fitted against a BSA standard curve (0, 12.5, 25, 50, 75, 100, 150, 200 μg/ml). For the ADSL assays, 50 ng protein was added into a 60 μM adenylosuccinate (AMPS)/40 mM Tris (pH 7.4)/10% glycerol solution, and conversion of adenylosuccinate to AMP was monitored by UV spectrophotometry, measuring absorption at λ 282 nm every minute for 20 min (Greiner UV-Star 96 well plates and BioTek PowerWave XS2 plate reader). ADSL activity was calculated using the extinction coefficient for the reaction (10,000 M-1 cm-1) in Excel. Wilcoxon tests and box plots were performed using R.
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2

Radiation Sensitivity Assay via WST-1

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Cells were treated with 0, 40, 60, or 80 Gy IR before a 24-h incubation. The WST-1 reagent (Sigma Aldrich) was used and data analyzed as per manufacturers instructions. With the following deviations, the WST-1 reagent was added 2 h prior to absorbance quantification. With the absorbance being read by Powerwave XS2 plate reader (BioTek).
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3

Chymase Activity Assay Protocol

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All chymase activity assays were conducted in 100 µL reaction volumes in Costar® 96-well ½-area microtiter plates (Corning), with 410nm absorbance readings every 30 seconds for 5 minutes using a PowerWave™ XS2 plate reader with Gen5™ software (BioTek) at 25 °C. This device corrects absorbance readings for a 1 cm path length to facilitate quantification accuracy. Briefly, enzyme samples were mixed with chymase assay buffer (0.1 M HEPES, 1 M NaCl, 10 % glycerol, 0.02 % NaN3, pH = 7.5), sometimes with 0.01 mg/mL heparin, to a total volume of 50 µL. Each reaction was initiated by the addition of 50 µL of 2× substrate solution containing chymase assay buffer (with or without 0.01 mg/mL heparin), 20 % DMSO, and suc-AAPF-pNA (Sigma) [55 (link)] or suc-AAPF-SBzl (LifeTein) [56 (link)]. The 2× substrate solution for suc-AAPF-SBzl assays also included 2 mM 5,5’-dithiobis-(2-nitrobenzoic acid) (DTNB).
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4

Quantifying Beta-Galactosidase Activity

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Beta-galactosidase assays were performed by the method of J. Miller [12 ]. The following solutions were mixed together prior to performing the assay: 100× Mg2+ solution containing 0.1 M MgCl2 and 4.5 M β-mercaptoethanol, 1× ONPG solution containing 4 mg/mL o-nitrophenyl-β-D-Galactoside (ONPG) dissolved in 0.1 M dibasic sodium phosphate buffer pH (7.5). 3 µL of 100× Mg2+, 66 µL of 1× ONPG, 30 µL of cell lysate, and 201 µL of 0.1 M sodium phosphate were mixed together to initiate the reaction. Reactions were incubated at 37 °C until a faint yellow color developed. Reactions were stopped by adding 500 µL of 1 M Na2CO3. To determine beta-galactosidase activity, absorbance was read at 420 nm using a BioTeK Powerwave XS2 plate reader.
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5

Quantifying PV3 Antigen Levels in Gradient Fractions

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To determine antigen level in gradient fractions a non-competitive sandwich ELISA was used to measure PV3 D and C antigen content [38 (link)]. Briefly, two-fold dilutions of antigen were captured using a PV3-specific polyclonal antibody, and detected using PV3-specific, D antigen (Mab 1050) or C antigen (Mab 517.3) specific monoclonal antibodies (kindly provided by NIBSC), followed by anti-mouse peroxidase conjugate [39 (link),40 (link)]. To determine the presence of individual antigen sites concentrated samples were captured using a PV3-specific polyclonal antibody and detected using antigen site-specific monoclonal antibodies, kindly provided by NIBSC, followed by anti-mouse peroxidase conjugate. The specific antigen sites are listed in Table 1. BRP (Sigma) was used as the standard for D antigen content in each ELISA. All ELISAs were analysed through Biotek PowerWave XS2 plate reader.
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6

Quantifying EVA71 Antigen Composition

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A sandwich ELISA method was utilised to determine the total and specific antigen composition of samples. To determine the total antigen content, we used mAb CT11F9 with 18/116 EVA71 antigen standard. A standard curve was generated from 2-fold diluted 18/116 standard and the resultant equation used to estimate the total antigen content of samples within a given plate [32 ]. To determine the specific NAg and HAg reactivity of samples we utilised a 16-2-2D scFv or mAb 979 in the detection phase as previously described [31 (link)]. Briefly, ELISA plates were coated overnight with polyclonal rabbit anti-EVA71 immune sera, plates were blocked, and samples were added to wells and incubated at 37°C for 1.5 hours. Either scFv or mAb was added to wells and incubated at 37°C for 1 hour. Anti-His HRP or anti-mouse HRP were used to detect scFv or mAb, respectively. Samples were incubated with OPD, reactions stopped with 3M HCl and the OD 492 nm measured using the Biotek PowerWave XS2 plate reader. Data was graphed using Graphpad Prism software.
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7

Leptin Signaling and Hypoxic Ventilatory Response

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Measurements of plasma levels of leptin were performed at room air (21% O2) in anesthetized rats. After general anesthesia as described above, whole blood samples were taken through a cardiac puncture. Blood samples were drawn into collection tubes containing the anticoagulant EDTA (Sigma-Aldrich, USA) and kept on ice. After centrifugation, the plasma was stored at−80°C for leptin analysis by ELISA kit (#ab100773, Abcam, USA), an in vitro enzyme-linked immunosorbent assay for the quantitative measurement as previously described (Panetta et al., 2017 (link)). The assay was read using a power wave XS2 plate reader (Biotek Instruments, USA).
To confirm whether the chronic activation of leptin signaling pathways played a part in the HVR, subcutaneous injections of leptin (60 μg/kg) or equal volume of vehicle (saline) were carried out once daily for 7 days in CBI LZRs (n = 8 for each group), and breathing parameters were measured after 7 day injections during exposure to room air or hypoxia. To further confirm the CB's role, subcutaneous injections of leptin or saline were performed 7 days after the carotid sinus nerves were sectioned in each group (n = 8 for both).
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8

Western Blot Analysis of Signaling Proteins

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Lysates were sonicated using a Heat Systems Ultrasonic Processor XL sonicator. Protein concentrations were determined using the DC Protein Assay kit and BioTek PowerWave XS2 plate reader. Lysates were resolved on SDS-polyacrylamide gels and transferred to nitrocellulose. Membranes were blocked with 5% BSA in 25 mM Tris, 150 mM sodium chloride, and 0.1% Tween-20 solution (TBS-T) rocking at room temperature for 1 h, then probed with the appropriate antibodies (anti-DRD2, DRD3, DRD4, PKC-θ, pWIP, WIP, pN-WASP, and N-WASP primary antibodies, 1:1000; anti-β-actin antibody (1:20,000); anti-α-tubulin antibody (1:10,000); and anti-GAPDH (1:2,500)) in 5% milk or BSA in TBS-T with 0.05% sodium azide with rocking at 4 °C overnight. Overnight incubation in primary antibody was followed by washing (3 × TBS-T) and incubation with the appropriate species-specific HRP antibody (1:10,000) in 5% milk in TBS-T with rocking at room temperature for 1 h. Western blots were developed using SuperSignal West Pico Chemiluminescent Substrate on a BioRad ChemiDoc MP. Densitometry was performed using FIJI and normalized to the housekeeping protein and control lysate proteins.
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9

Quantification of Phytochemicals in Plant Extracts

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The TP content in the extract was determined using the Folin-Ciocalteu method, as described by Kalita et al. [28 ]. To measure the TP, 30 μL of the extract was mixed with 50 μL distilled water in wells of a 96-well plate. Fifty microliters of Folin Ciocalteu reagent and 80 μL Sodium carbonate (75 g/L) was added to each well in the plate, mixed well with a pipette, and then shaken for 4 min in a plate reader. The plates were incubated for 2 h at 25 °C in the dark. The absorbance of the contents was measured with a Power wave XS2 plate reader (BioTek) at 760 nm. Gallic acid was used as the standard and TP were quantified as μg/g of gallic acid equivalent per gram freeze-dried sample.
To measure TF (30 μL) was added to 80 μL aluminum chloride (20 g/L) in a 96-well at-bottom microplate on ice. Samples were shaken for 30 sec. and then the plates were kept in the dark at 25 °C for 1 h. The absorbance of the reaction was measured at 415 nm. Quercetin was used as the standard. TF were expressed as μg of quercetin equivalents per gram of freeze-dried weight.
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10

Colorimetric Fructosamine Quantification

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The Amadori product measurements were determined based on colorimetric fructosamine assay using nitro-blue tetrazolium (NBT) reaction with ketoamines [26 (link)] as follows: 100 μL of sample (25 μg/mL) was added to 100 μL of NBT reagent (250 μM in 0.1 M carbonate, pH 10.8) and incubated at 37 °C for 45 min. The absorbance was recorded at 525 nm over a blank using a BioTek Power Wave XS2 plate reader (USA).
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