The largest database of trusted experimental protocols

9 protocols using anti traf2

1

Western Blot Analysis of Autophagy and Apoptosis Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the assessment of GSTP1-1 and TRAF2 intracellular levels, a fixed number of synchronized U-2OS cells (∼7.5 × 104 cells) were lysed as previously reported18 (link) and loaded on a 12% SDS-polyacrylamide gel. Proteins were then transferred to PVDF membranes (Millipore, Billerica, MA, USA). For the assessment of LC3-II levels, cell lysates from U-2OS cultures, untreated or treated with CQ (2.5–40.0 μM dose range) for 24 h, were subjected to immunoblot analysis, as previously described.30 (link) A monoclonal anti-GSTP1-1, a polyclonal anti-TRAF2 (Cell Signaling), a polyclonal anti-LC3 (Novus Biologicals, Littleton, CO, USA) and a monoclonal anti-β-actin (Sigma-Aldrich) were used as primary antibodies. Anti-rabbit or anti-mouse secondary antibodies (Cell Signaling) were revealed with the ECL LiteAblot Extend (EuroClone). ImageJ software was used to analyze the band intensities.
+ Open protocol
+ Expand
2

Protein Expression Profiling by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extracts were loaded onto and separated by SDS-PAGE resolution (Pulilai Co., Beijing, China), followed by transferred onto a PVDF membrane. Next, membrane was blocked and incubated with primary antibodies and HRP-conjugated secondary antibody. Primary antibodies used in current experiments were listed: anti-NF-κB (Abcam, ab32536), anti-phospho-NF-κB (S536) (Abcam, ab76302), anti-IκBα (Cell Signaling Technology, 4812), anti-phospho-IκBα (S32) (Cell Signaling Technology, 2859), anti-TRAF2 (Cell Signaling Technology, 4712), anti-STAT3 (Cell Signaling Technology, 12640), anti-phospho-STAT3 (Y705) (Cell Signaling Technology, 9145), anti-IFNGR2 (ABclonal Technology, A7558), and anti-PD-L1 (Proteintech, 66248-1-Ig). β-actin was applied as a control for protein loading. Gels were visualized using the ECL system (Amersham Biosciences, Uppsala, Sweden) to determine the expression level of targeted proteins.
+ Open protocol
+ Expand
3

Comprehensive Antibody Validation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used are anti-LexA (06-719, Millipore), anti-Myc 9E10 (MMS-150P, Covance), anti-Flag M2 (A8592, Sigma Aldrich), anti-GFP (632592, Clontech), anti-Actin (A2066, Sigma Aldrich), anti-HOIP (MAB8039, R&D systems), anti-RBCK1/HOIL-1L (HPA024185, Sigma Aldrich). Anti-Phospho-IκBα (2859), anti-IκBα (4814), anti-Phospho-p65 (3033), anti-p65 (8242), anti-TRADD (3684), anti-TRAF2 (4712), anti-IKKα (11930), anti-TNF-R1 (3736) and anti-TAK1 (4505) were purchased from Cell Signaling. Anti-IKBKG/NEMO antibodies were purchased from Sigma Aldrich (SAB1404591) and Millipore (05-631).
Cell lines used in this study HEK293T (CRL-3216), HeLa (CCL-2), CaCo-2 (HTB-37) and U2OS (HTB-96) were purchased from ATCC. Parental cell lines were tested and determined to be mycoplasma free.
+ Open protocol
+ Expand
4

Detecting RIPK3 and MLKL Oligomers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting experiment was described previously (Zhao et al., 2019 (link)), and the detection of RIPK3 or MLKL oligomers was performed according to the method described by Wang et al. (2019) (link). The following antibodies were used for the experiments: anti-FADD (1:1000, 610399) and anti-RIPK1 (1:3000, 610458) (BD Transduction Laboratories, San Jose, CA); anti-phospho-RIPK3 (1:1000, ab195117), anti-MLKL (1:1000, ab172868), anti-phospho-MLKL (1:1000, ab196436) (Abcam, Cambridge, MA, United States); anti-RIPK1 (1:3000, 3493), anti-RIPK3 (1:3000, 15828), anti-Myc tag (1:2000, 2276), anti-HA tag (1:2000, 3724), anti-Flag tag (1:2000, 14793), anti-TRAF2 (1:1000, 4724), anti-phospho-RIPK1 (1:1500, 31122) and anti-phospho-RIPK3 (1:1000, 57220) [Cell Signaling Technology (CST), Beverly, MA]; anti-TRADD (1:1000, ABP52634) and anti-GAPDH (1:1500, ABP52783) (Abbkine, Redlands, CA, United States); anti-β-actin (1:3000, A5441) (Sigma-Aldrich). All western blot assays were performed three times, and the representative results are shown.
+ Open protocol
+ Expand
5

Molecular Interactions in TAK1 Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-phospho-TAK1 (Thr-187), rabbit anti-TAK1, anti-TRAF2, anti-TRAF6, anti-TAB1, anti-TAB2, anti-phospho-IKKα/β (Ser176/180), anti-phospho-MKK7 (Ser-271/Thr-275), and anti-MKK7 antibodies were purchased from Cell Signaling Technology. Anti-TAB3 antibody was from Abcam. Anti-Myc antibody, normal mouse IgG and normal rabbit IgG were from Millipore. Anti-Flag antibody (M2) was obtained from Sigma. Anti-HA, anti-α-Tubulin, and horseradish peroxidase-conjugated secondary antibodies were from Santa Cruz Biotechnology. Rabbit anti-Vpr antibody was provided by National Institutes of Health (NIH) AIDS Research and Reference Reagent Program. Mouse anti-p24 and anti-TAK1 were generated by immunizing mice with the corresponding full length proteins purified form E. coli BL21 (DE3). 4′, 6-diamidino-2-phenylindole (DAPI) and PMA were purchased from Sigma. Fluorescein-conjugated anti-mouse and anti-rabbit secondary antibodies were purchased from Jackson ImmunoResearch Laboratories. Serine/Threonine phosphatase inhibitor Calyculin A was purchased from Cell Signaling Technology.
+ Open protocol
+ Expand
6

Western Blot Analysis of Apoptosis Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed using anti-TRIM31, anti-cleaved caspase 3, anti-PARP, anti-p65, anti-IκBα, anti-IKK-β, anti-BCL2, anti-XIAP, anti-SURVIVIN, and anti-TRAF2 antibodies, (Cell Signaling, Danvers, MA, USA). The membranes were stripped and re-probed with an anti-α-tubulin antibody or anti-α-tubulin antibody (Sigma, St Louis, MO, USA) as a loading control.
+ Open protocol
+ Expand
7

Nasopharyngeal Cell Lines Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human immortalized nasopharyngeal epithelial cell NP460 and nasopharyngeal carcinoma cell lines, including CNE1, CNE2, C666-1, HNE1, HNE3, HK1, HNE2, HONE1, and SUNE1, were obtained from the Cell Bank of Chinese Academy of Sciences (Shanghai). The 293T cells for virus infection was purchased from American Type Culture Collection (ATCC, Manassas, VA). All cells were cultured by following the standard protocols. The primary antibodies including anti-TRAF2, p-MSK1, p-CREB, cyclin D1, CDK4, cyclin A, CDK2, cyclin B, CDK1, p27, p21, β-actin, Ki67, cleaved PARP, cleaved caspase-3, and secondary HRP-conjugated goat anti-mouse/rabbit IgG antibodies were products of Cell Signaling Technology (Danvers, MA). The SuperSignal™ West Dura Extended Duration Substrate was a product of Thermo Fisher Scientific (Waltham, MA).
+ Open protocol
+ Expand
8

Quantitative Protein Analysis Workflow

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot analysis was performed according to our previously described protocol [21 (link)]. Primary antibodies included anti-TRAF2 (1:1000, Cell Signaling Technology 4724), anti-VEGFA (1:1000, Santa Cruz Biotechnology sc-7269), and anti-β-actin (1:2000, Proteintech 81115-1-RR).
+ Open protocol
+ Expand
9

Comprehensive Antibody Validation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used are anti-LexA (06-719, Millipore), anti-Myc 9E10 (MMS-150P, Covance), anti-Flag M2 (A8592, Sigma Aldrich), anti-GFP (632592, Clontech), anti-Actin (A2066, Sigma Aldrich), anti-HOIP (MAB8039, R&D systems), anti-RBCK1/HOIL-1L (HPA024185, Sigma Aldrich). Anti-Phospho-IκBα (2859), anti-IκBα (4814), anti-Phospho-p65 (3033), anti-p65 (8242), anti-TRADD (3684), anti-TRAF2 (4712), anti-IKKα (11930), anti-TNF-R1 (3736) and anti-TAK1 (4505) were purchased from Cell Signaling. Anti-IKBKG/NEMO antibodies were purchased from Sigma Aldrich (SAB1404591) and Millipore (05-631).
Cell lines used in this study HEK293T (CRL-3216), HeLa (CCL-2), CaCo-2 (HTB-37) and U2OS (HTB-96) were purchased from ATCC. Parental cell lines were tested and determined to be mycoplasma free.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!