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Sodium 2 2 dimethyl 2 silapentane 5 sulfonate dss

Manufactured by Cambridge Isotopes
Sourced in United States

Sodium 2,2-dimethyl-2-silapentane-5-sulfonate (DSS) is a chemical compound widely used as an internal standard in nuclear magnetic resonance (NMR) spectroscopy. It serves as a reference signal for the calibration and analysis of NMR spectra.

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3 protocols using sodium 2 2 dimethyl 2 silapentane 5 sulfonate dss

1

NMR Spectroscopy of Serum Metabolites

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Samples stored at −80 °C were thawed and 110 µL of serum transferred to a fresh 1.5 mL Eppendorf tube, and 450 µL of 1 x DPBS (Gibco Life Technologies), 50 µL of D2O (Cambridge Isotope Laboratories, Inc, MA, USA), and 10 µL of sodium 2,2-dimethyl-2-silapentane-5-sulfonate (DSS) (Cambridge Isotope Laboratories, Inc, MA, USA) (3.7 mg in 700 µL MilliQ water) added. Samples were centrifuged at 14,000 rpm for 10 min at 4 °C, and 550 µL transferred to an NMR tube. One-dimensional NMR spectra (128 scans) were recorded at 298 K using a standard CPMG sequence on a Bruker Avance III 600 MHz spectrometer equipped with a cryoprobe using automated data collection via IconNMR software (Bruker). Two-dimensional spectra were recorded on selected samples, including COSY, TOCSY, and 1H-13C-HSQC. Samples were processed randomly. Metabolite assignments were based on the Human Metabolome Database57 (link) and chemical shifts derived from standard samples. For the statistical analysis, spectra were normalized to total intensity.
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2

Preparation of High-Purity Solvents

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All chemicals were purchased from Sigma-Aldrich (USA). Methanol and chloroform HPLC grade were purchased from Scharlau (Spain). H2O was deionized using Ultra Clear UV plus TM water system (SG water, Germany) to the quality of 18.2 MΩ. D2O 99.9% and sodium 2,2-dimethyl-2-silapentane-5-sulfonate (DSS) were purchased from Cambridge Isotope Laboratories Inc. (USA).
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3

NMR Spectroscopy of DNA-Aflatoxin Complexes

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aflatoxins B1 and G1 were purchased from Shanghai Yuanye Bio-Technology Co., Ltd and J&K Scientific (Beijing, China), respectively, and the aflatoxins were dissolved in dimethyl sulfoxide-d6 (DMSO) as stock solution for further use. Tris (D11, 98%) and sodium 2,2-dimethyl-2-silapentane-5-sulfonate (DSS) were from Cambridge Isotope Laboratories. DNA oligos were synthesized by Sangon Biotechnology Co., Ltd (Shanghai, China). NMR samples were prepared by dissolving the lyophilized DNA powder in either D2O or 90% H2O/10% D2O containing 10 mM Tris (1D 1H NMR spectra) or Tris-d11 (2D NMR spectra), 50 mM NaCl and 50 mM MgCl2 (pH 6.5–7.5). For 1D 1H NMR spectra, low-concentration DNA samples (50–100 μM) were used. For 2D NMR study, DNA samples with higher concentration (1–3 mM) were used, and 1–2 equivalents of AFB1 were added.
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