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5 protocols using esi interface

1

Mass Spectrometric Analysis of Alpha-Synuclein Fibrils

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Proteolyzed samples (5–20 μl) were separated using an HPLC (Agilent 1100 series, Agilent Technologies) on a reverse phase C18 column (Zorbax, 2.1 × 50 mm, 3.5 μm, Agilent Technologies) and introduced into the mass spectrometer as described (65 (link), 66 (link)). Fibrillar samples were preincubated to a final concentration of 2 m guanidium hydrochloride before injection. Positive ion electrospray ionization (ESI) mass spectra for intact protein (peptides) of α-syn were obtained with an Agilent G1956B mass selective detector (MSD) equipped with an ESI interface (Agilent Technologies). The HPLC systems and MSD were controlled and data were analyzed using LC/MSD ChemStation software (Rev. B.04.03, Agilent Technologies).
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2

HPLC-UV and LC-MS Analysis of Phenolic Compounds

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The analysis was performed on Shimadzu LC-20 (Shimadzu Corporation, Kyoto, Japan), ZOBRAX Eclipse XDB-C18 column, particle size 250 mm × 4.6 mm, 5 µm (Agilent Technologies Inc. Santa Clara, CA, USA) and an SPD-10A UV-VIS detector. The mobile phase consisted of 1% v/v aqueous acetic acid (mobile phase A) and absolute methanol (mobile phase B). Elution was performed with 10%–60% B for 35 min, 100% B for 10 min, and 10% B for 5 min at 30 °C, a flow rate of 0.5 mL/min, and a sample volume of 10 µL. The column was equilibrated with 10% B for 5 min before next injection. Tentative identification of phenolic compounds in the samples, external standards of (+)-catechin(C), (−)-epicatechin (EC), procyanidin A2, procyanidin B2 were used. For molecular weight identification, an LC-MS system, equipped with an ESI interface (Agilent Technologies Co., Ltd., Santa Clara, CA, USA) was used. Similar elution conditions as described above were followed. The procyanidins were detected by ESI-MS set at a negative ion mode. The orifice voltage was −30 V and heat capillary temperature was 275 °C. The mass scale was defined from 100 to 1200 m/z.
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3

LC-MS/MS Analysis with API 4000

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The LC-MS/MS instrument (API 4000) consisted of an LC system with a binary pump (Model SL) and a triple-quadrupole mass spectrometer with an ESI interface (Agilent Technologies Inc., Santa Clara, CA, USA). The system was controlled using Mass Hunter Analyst software (version 1.6.2, Agilent Technologies Inc.).
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4

Identification of Compounds via HPLC-ESI-MS/MS

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The HPLC-ESI-MS/MS analyses were performed using a 1100 Series Agilent Technologies LC/MSD system equipped with a diode array detector coupled to a quadrupole mass spectrometer with an ESI interface (Agilent Technologies, Mississagua, Ont.). The reverse-phase separation was performed on a Vydac C18 column (5 μm; 250 mm × 4.6 mm; Grace, Hespedia, CA.). The compounds were separated using eluent (A): 4.5% aqueous formic acid and eluent (B): acetonitrile diluted to 80% with 4.5% formic acid in water. The gradient was as follows: 7 min 15% B; 15 min 20% B; 16 min 100% B and in 24 min returned to 100% of eluent A. MS parameters were as follows: capillary voltage 4000 V; drying gas temperature 350 o C; nitrogen fl ow 12 L/min; nebulizer pressure 60 psi. The instrument was scanned positive and negative ions in the range from 100 to 1500 m/z at a rate of 2.0 s/cycle. Compounds identifi cation is based on spectra library developed in laboratory and published data (Gil-Izquierdo and Mallenthin, 2001) .
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5

HPLC-DAD-MS Analysis of Phenolic Compounds

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Analysis was firstly carried out using a HP-1100 liquid chromatograph equipped with a DAD detector and a HP1100 MSD API-electrospray (Agilent-Technologies, Palo Alto, CA) operating in positive and negative ionization mode under the following conditions: gas temperature 350 C, nitrogen flow rate 10 L/min, nebulizer pressure 35 psi, quadrupole temperature 30 C, capillary voltage 4000 V, and applied fragmentors in the range 50-250 V.
Further identification and characterization of the phenolic compounds was performed by a TOF-MS with an ESI interface (Agilent Technologies) under the following conditions: gas temperature 300 C, nitrogen flow rate 12 L/min, nebulizer pressure 20 psi, capillary voltage 3800 V, and applied fragmentors in the range 80-300 V.
The column was a Synergi Max RP 80 A (4 mm; 150 mm  3 mm i.d.) from Phenomenex (Castel-Maggiore, BO, Italy). The mobile phases were: (A) acidified water (pH 2.0) and (B) acetonitrile. The following multistep linear gradient was applied: from 95% to 78% A in 8 min, 4 min to reach 74% A, then 13 min to arrive at 65% A, and finally 3 min to reach 100% B with a final plateau of 4 min. The total time of analysis was 32 min, flow rate was 0.4 mL/min, and oven temperature was 26 AE 0.5 C, as described in our previous study (Ieri et al., 2011) (link).
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