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5 protocols using sc 8418

1

Imaging of P-bodies in Fixed Cells

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Fixed cells were imaged at room temperature on an Axioimager Z1 wide-field microscope (63×, NA 1.4; ZEISS) equipped with an sCMOs Zyla 4 0.2 camera (Andor Technology) and controlled by MetaMorph (Universal Imaging). 3D image stacks were collected with a Z-spacing of 0.3 µm. Figures were prepared with ImageJ (National Institutes of Health), Photoshop (Adobe Systems), and Illustrator (Adobe Systems), and graphs were generated with R.
P-bodies were labeled with a mouse monoclonal antibody raised against S6K and that is known to recognize GE-1/Helds (sc-8418; Santa Cruz Biotechnology, Inc.; Kedersha and Anderson, 2007 (link)). The secondary anti-mouse antibody was coupled to FITC. Slides were mounted in Vectashield with DAPI (Vector Laboratories).
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2

Protosappanin B Anti-Cancer Protocol

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Protosappanin B was purchased from Shanghai Yuanye Bio-Technology Co. Ltd. (B21622-20 mg, Shanghai, China). Reagents, signaling pathway agonists and antibodies were purchased from the following companies: RPMI-1640 medium, DMEM medium (Shanghai Yuanye Bio-technology, Shanghai, China); Streptavidin Peroxidase immunohistochemistry kit (GS4961, GS4962), cell counting kit-8 (QN1293), Annexin V-FITC/PI double staining apoptosis detection kit (SNM530), and ECL western blotting detection kit (QN1155) (Beijing BioRab Technology Co. Ltd., Beijing, China); BCA protein assay kit (C05-02001), western blocking buffer (5% BSA, C05-06002) (Beijing Biosynthesis Biotechnology Co., Ltd, Beijing, China); IGF-1 (K002504P), AZD2858 (A126819), and TPA (bs-1545R) (Shanghai Hengfei Biotechnology Co. Ltd. Shanghai, China); Anti-GOLPH3 (ab98023), Anti-p-AKT (ab8805), Anti-AKT (ab38449), and anti-PCNA (proliferating cell nuclear antigen) (ab18197) (Abcam, Cambridge, UK); Anti-p-p70S6K (ribosomal protein S6 kinase, 70 kDa) (sc-8416), Anti-p70S6K (sc-8418), Anti-β-catenin (sc-7963), Anti-p-ERK1/2(extracellular signal-regulated kinase 1 and 2) (sc-81492), Anti-ERK1/2 (sc-514302), Anti-GAPDH (sc-365062), and secondary antibodies (sc-516102, sc-2357) (Santa Cruz Biotechnology, Inc., Dallas, TX, USA).
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3

Kidney Protein Analysis by Western Blot

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Kidneys were collected and homogenized in T-PER lysis buffer (Thermo Fisher Scientific) supplemented with protease (Pierce) and phosphatase inhibitors (Roche). The homogenized lysate was incubated at 4°C for 20 min and cell debris cleared by centrifugation at 12,000 g for 10 min. 50 µg of protein lysate from each kidney was analyzed by SDS-PAGE. Membranes were incubated overnight at 4°C with the following primary antibodies: anti–phospho–p-S6K (1:200; Tyr 389; 9205; Cell Signaling Technology), anti–p-S6K (1:1,000; sc-8418; Santa Cruz Biotechnology), anti–phospho-S6 (1:200; Ser235/236; 2211; Cell Signaling Technology), anti-S6 (1:500; sc-74459; Santa Cruz Biotechnology), and anti-actin (1:1,000; A4700; Sigma-Aldrich). Secondary antibodies included donkey anti–rabbit IgG–horseradish peroxidase (Sigma-Aldrich) and goat anti–mouse IgG–horseradish peroxidase (Jackson ImmunoResearch Laboratories). Blots were imaged on a C-DiGit Blot Scanner (LI-COR), and signal intensities for each protein were quantified and normalized to actin.
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4

Multicolor Immunofluorescence Staining Protocol

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Cells were fixed for 5 min in 3.7% paraformaldehyde (PFA) (Sigma-Aldrich) followed by 2 min permeabilization with 0.5% NP-40 (EMD Millipore). The coverslips were incubated with blocking solution (1% bovine serum albumin) for 1 h at RT. Primary antibodies used for immune staining were diluted in blocking solution and applied to the coverslips for 1 h at RT; this was followed by three short rinses in PBS. Primary antibodies were as follows: anti-Matr3C (ab84422; Abcam), anti-Matr3N (ab51081; Abcam), and mouse anti-S6K used to detected Hedls (sc-8418; Santa Cruz) at 1:200; rabbit anti-Rck/p54 (A300-461A; Bethyl Laboratories, Montgomery, TX) and mouse anti-PABP-1 (10E10, sc-32318; Santa Cruz) at 1:200. Next the coverslips were incubated with secondary antibodies, diluted 1:1000 in blocking buffer, and conjugated to Alexa Fluor 405, 488, or 546 (Invitrogen, Carlsbad, CA) for 1 h at RT. The coverslips were next stained with 4′,6-diamidino-2-phenylindole and rinsed with PBS before being mounted onto slides using Mowiol mounting media. Images were acquired at RT using a using an Olympus IX81 wide-field microscope with a 40× air objective lens attached to a Hamamatsu Orca-R2 cooled CCD camera. Pearson’s colocalization coefficients were determined using the Coloc2 plug-in in imageJ.
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5

Antibody Immunostaining Assay Protocol

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Antibodies against p70S6K (sc-8418), LAMP1 (sc-19992), and phospho-mTOR (sc-293133) were purchased from Santa Cruz Biotechnology (USA). Antibodies against phosphor-p70S6K (AP0564), RRAGA (A15134), RRAGD (A9979), and ADORA1 (A5219), ADORA2A (A1587) were purchased from ABclonal (China). Antibodies against NT5C2 (15223-1-AP), RRAGB (13023-1-AP), RRAGC (26989-1-AP), SP1 (21962-1-AP), YY1 (66281-1-lg), mTOR (66888-1-Ig), Actin (66009-1-lg), GAPDH (10494-1-AP), ADA1 (13328-1-AP), MDH2 (15462-1-AP), MDH1 (15904-1-AP), ACO1 (12406-1-AP), CS (16131-1-AP), GLUD1 (14299-1-AP), and SDHB (10620-1-AP) were purchased from Proteintech (China). Antibody against PNP (DF8260) was purchased from Affinity (China). Antibody against puromycin (MABE343) was purchased from Sigma-Aldrich (USA). Antibody against Ki67 (ab15580) was purchased from Abcam (UK).
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