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Obi system

Manufactured by Agilent Technologies
Sourced in United States

The OBI system is a laboratory equipment product offered by Agilent Technologies. It is designed to perform optical biological imaging. The core function of the OBI system is to enable imaging and analysis of biological samples using optical techniques.

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7 protocols using obi system

1

Trilogy Linear Accelerator Guided Radiotherapy

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A Trilogy medical linear accelerator (Varian, Trilogy, CA, US) is used at our center. The Eclipse system (Varian, Palo Alto, CA, USA) was selected as the treatment planning system. Optical surface scanner with reprojection capabilities (C-RAD Catalyst, Uppsala, Sweden) was used in this study (Figure 1). The OBI system (Varian, Palo Alto, CA, US) was used for CBCT.
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2

Validating Prostate Localization Model

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In this institutional review board (IRB)-approved study, the trained prostate localization model is validated by retrospective analysis of 10 patients treated with VMAT from 2015 to 2017. In addition to the pCT images, all patients underwent either kV CBCT scans or orthogonal kV projection using the OBI system (Varian Medical System, Palo Alto, CA) for positioning before treatment.
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3

EPID-Guided Radiation Therapy for PC and HNC

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The treatments were delivered with a TrueBeam or TrueBeam STx (Varian Medical Systems) equipped with an amorphous silicon EPID (aS‐1200) with 16‐bit quantization levels, a matrix size of 1,190 × 1,190 pixels, and pixel size of 0.336 mm. In PC patients, cone‐beam computed tomography (CBCT) images were obtained using the onboard imager (OBI) system (Varian Medical Systems) to correct the initial setup positions based on localization of the prostate. The initial setup positions of the HNC patients were corrected based on the vertebral bone anatomy using ExacTrac (BrainLAB, Heimstetten, Germany) or the OBI system. On‐treatment integrated EPID images were obtained as the photon fluence at the position of the EPID for each treatment arc.
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4

Comprehensive Cancer Treatment Protocol

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Data from forty real cases involving 40 patients, including ten head cancer patients, ten chest cancer patients, ten abdominal cancer patients, and ten pelvic cavity cancer patients, were collected at the Affiliated Hospital of the Armed Police Logistics College, Tianjin, China (It has been renamed Characteristic Medical Center of PAP) from December 2012 to December 2016. The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013). The study was approved by the ethics committee of the Affiliated Hospital of the Armed Police Logistics College (No.PJHEC-2016-A18). Informed consent was not required since this was not a treatment study. The planning design and dose calculation were performed on the Varian Eclipse (version 10.0, Palo Alto, CA, USA) treatment planning system (TPS). CIRS 062 and Catphan 504 phantoms were used as in the tests (19 (link)). CBCT image scattering correction was implemented in the CITK software based on Qt 5.6, EGSnrc, the RTK open-source software platform and the MITK open-source software platform (27 (link)). The CBCT slice images were reconstructed online by the Varian OBI system, and the projection images were exported at the same time.
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5

Multimodal Imaging of Wuphantom for Radiotherapy

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CT images of the Wuphantom were acquired with a Siemens Definition Edge CT scanner [Fig. 2(a)]. All CBCT scans were obtained on a Truebeam linear accelerator with an OBI System (Varian Medical Systems, Inc., CA, USA) [Figs. 2(b) and 2(d)]. The CT image has a voxel resolution of 0.98 × 0.98 × 2 mm. Scanning was done with an established head and neck CT protocol (35 cm FOV, 120 kVp, 2.0 mm slice thickness, and 300 mA). The CBCT images were acquired with pelvis, head and "Image Gently” protocols to represent images with various noise and dose levels, with image quality levels ranging from best to worst in a typical clinical environment. Image Gently protocol gives much less radiation exposure to patients at the cost of increased image noise level, mostly used for patient alignment or pediatric patients. Image acquisition variables are shown in Table 1. All images were then transferred to a Velocity Workstation 4.0 (Varian, Inc.).
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6

Verifying Protura Couch Alignment Using kV Imaging

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Similar to section “CBCT of a HexaCHECK MIMI Phantom,” the isocentricity test can also be done using 2-dimensional kV imaging of a custom-made phantom. The HexaCHECK phantom provided by the Protura vendor at the time of installation can be used for commissioning, whereas the custom-made phantom can be used as a crosscheck of HexaCHECK and established baselines for subsequent routine QA tests when HexaCHECK phantom is not available in the clinic. The custom-made 7.5 × 7.5 × 7.5 cm cube with a 6-mm sphere at the center of the phantom was used for virtual and physics graticule alignment checks. The 2D kV images were taken with and without known rotations, such as 2° pitch and 1° roll. The isocenters with crosshair display on the kV images were compared with and without rotations. Figure 5 shows the display of Protura workstation that is interfaced with the Varian OBI system. The tolerance of crosshair centering was 1 mm. Figure 6 shows that the Protura system could accurately correct to the couch rotation position (2° pitch and 1° roll) executed with the isocenter as the virtual reference point. In routine monthly QA, a different combination of pitch and roll can be tested besides the commissioning values. For example, any 2 combinations of pitch, roll, and yaw could be sufficient if on a rotational basis (ie, different combination in even months and odd months).
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7

Monte Carlo Simulation Workflow for CBCT Imaging

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The MC simulation workflow is shown in Figure S2. This operation mainly includes three parts (1). The pCT images and CBCT registration information are obtained, and the pCT images are input. Immediately, each pCT image is preprocessed by the ‘ctcreate’ subroutine of EGSnrc to obtain the initial voxels. The registration information is combined, and the initial voxel is corrected (2 (link)).The scanning model and MC optimization parameters are input, based on which the MC simulation settings are preprocessed (3 (link)). The CBCT modeling parameters and detector modeling parameters are input, and the ‘BEAmnrc’ subroutine is used to construct the CBCT simulation system. Finally, four subroutines are used to perform the simulated imaging, scatter estimation, energy deposition and dose deposition. As shown in Figure S3, first, downsampling of the scattering estimation and projection data is performed. Then, pixel calibration is conducted to establish the relationship between them. The scattering estimation is then extracted from the projection images. Finally, the projection images are upsampled and imported into the Varian OBI system.
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