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2 protocols using t4 polymerase

1

Construction of CBS Domain Deletion Mutant

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The CBS domain deletion mutant (MtbIMPDH2ΔCBS) was constructed via the megaprimer cloning method [51 (link)]. Wild type MtbIMPDH2 clone in vector pMCSG7 [27 (link)] was used as a template. The E126-R252 (ΔCBS) deletion primer and the MtbIMPDH2 coding sequence forward primer were used to amplify a region of MtbIMPDH2-pMCSG7 ranging from the residue M1 to residue V261 with 5’ LIC overhang, while replacing codons for residues E126-R252 with codons for GG. The resulting product was used as a megaprimer in the whole plasmid synthesis reaction, with MtbIMPDH2-pMCSG7 as template and a reverse primer encoding 3’ end of MtbIMPDH2. KOD Hot Start DNA polymerase kit (EMD Millipore) was utilized in a PCR reaction. Cycling was performed at 95° for 3 min, followed by 95° for 40 sec, 53° for 40 sec, 72° for 1.5 min for 32 cycles. The PCR product was treated with T4 polymerase (Promega), annealed into pMSCG7 vector, transformed into E. coli BL21(DE3) cells carrying the pMAGIC plasmid encoding rare E. coli tRNA (Arg (AGA/AGG)) [52 (link)] and the resulting clone sequenced.
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2

Molecular Techniques for Gene Expression Analysis

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Dulbecco's Modified Eagle's Medium (DMEM), Opti-MEM® I Reduced-Serum Medium, fetal bovine serum (FBS), TRIzol RNA isolation reagent, ElectroMAX DH12S competent cells with M13KO7 helper phage, and primers were obtained from Invitrogen (Grand Island, NY or Shanghai, China). E3330, myrecitin, synthetic siRNA against Pol β and other general chemicals were obtained from Sigma-Aldrich (St, Louis, MO, USA). Biotin-conjugated or unconjugated tetrahydrofuran sites containing oligonucleotides were obtained from Takara (Dalian, China). The VEGF ELISA kit was obtained from R&D (Minneapolis, MN, USA). Dual luciferase vector pmirGLO, the Dual-Glo® luciferase assay kit, the FuGENE 6 transfection reagent, T4 polynucleotide kinase (T4 PNK), T4 ligase, T4 polymerase, restriction endonucleases, and high-fidelity Pfu DNA polymerase were purchased from Promega (Madison, WI, USA). The QuickChange mutagenesis kit was purchased from Stratagene (Santa Clara, CA, USA). The Halt protease inhibitor cocktail, Protein A/G agarose beads, a GST protein interaction pulldown kit, LightShift chemiluminescent EMSA kit, SuperSignal West Pico chemiluminescent reagents, horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG antibodies and other Western blot-related reagents were purchased from Pierce (Rockford, IL, USA).
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