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9 protocols using p mek1 2s217 221

1

Western Blot Analysis of Signaling Pathways in Purified Immune Cells

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Purified B cells or T-cells were lysed using 20 mM Tris-HCl (pH7.5), 150 mM NaCl, 1 mM Na2EDTA, 1 μg/ml leupetin, 1% Triton X-100, 1 mM PMSF and 1 mM Na3VO4. Total protein was quantified by the Bradford assay, and 10 μg was loaded per lane onto SDS-PAGE gels. The following primary Abs were obtained from Cell Signaling Technology: p-STAT3S727 (#9134), P-Erk1,2T202/Y204 (#4376), Erk1,2 (#4695), p-NF-κBS536 (#3031), p-MEK1/2S217/221 (#9121), MEK1/2 (#9122), AKT (#9272), p-AKTT308 (#9275), α-tubulin (#2144). β-actin (Advanced Immunochemical Inc, catalog # RGM2), Bcl-2 (Santa Cruz Biotechnology, Inc., # sc-23960). Antibodies to Nrf2 (ab71890), NQO1 (ab2346), GCLC (ab53179) and GCLM (ab81445) were purchased from Abcam. HRP-conjugated secondary antibodies and the ECL-plus detection kit (Amersham) were used to develop the blot. For western blot analysis of purified B and T-cells, cells were pooled from 3-4 mice for each lane. The respective band intensities were measured using ImageJ software version 1.37 (http://rsb.info.nih.gov/ij), and normalized against the corresponding β-actin or α-tubulin levels. Where samples from different strains were compared, normalized band intensities were expressed as ratios, relative to the corresponding B6 levels.
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2

Antibody Generation and Immunoblotting Protocol

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Rabbit anti-TNS1 antibody was generated against human TNS1 aa1328–1339 peptide16 (link). Antibodies against E-cadherin (#9121), pMek1/2(S221) (#2338), pMek1/2(S217/221) (#9154), Mek1/2 (#9122), pERK1/2(T202Y204) (#9101), ERK1/2 (#9194), pAkt(S473) (#9271), Akt (#9272), pGSK3β(S9) (#5558), and GSK3β (#12456) were from Cell Signaling Technology. Anti-GAPDH (#CB1001) was from Millipore. Anti-Vinculin (#693291) was from MP Biomedical. Anti-mouse or rabbit IgG HRP conjugated secondary antibodies (#7076, #7074) were from Cell Signaling Technology. Alexa Fluor secondary antibodies (488/594) and Alexa Fluor 488/594 Phalloidin were from Thermo Scientific and anti-GP135/Podocalyxin (#3F2/D8) was from the Developmental Studies Hybridoma Bank at the University of Iowa. VECTASHIELD antifade DAPI mounting solution was from Vector Labs. Mek inhibitors CI-1040 (#S1020), selumetinib (#S1008), trametinib (#S2673) were from Selleckchem, and PD98059 (#9900), U0126 (#9903) were from Cell Signaling Technology.
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3

Protein Expression and Immunoblotting Analysis

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Cells were lysed in RIPA buffer containing protease and phosphatase inhibitors. Lysates were sonicated for 15 sec., centrifuged at 18k × g for 10 min. at 4°C, and protein in supernatants was quantified using BCA assay (Pierce). Reduced/denatured lysates were separated by SDS-PAGE, and proteins were transferred to nitrocellulose. Even protein loading across lanes was confirmed with Ponceau S staining. Blots were probed with antibodies against P-REX1 (Abcam), HA, HER3 (Santa Cruz), Rac1 (Cytoskeleton), p-AKTS473, p-AKTT308, AKT, p-S6S240/4, p-ERK1/2T202/Y204, p-MEK1/2S217/221, p-IGF-1RβY1135/6/p-InsRβY1150/1, IGF-1R, IRS-1, p-HER3Y1289, or Actin (Cell Signaling). HRP-labeled secondary antibodies (GE Healthcare) and ECL substrate (Pierce) were used for signal detection.
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4

Protein Expression and Immunoblotting Analysis

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Cells were lysed in RIPA buffer containing protease and phosphatase inhibitors. Lysates were sonicated for 15 sec., centrifuged at 18k × g for 10 min. at 4°C, and protein in supernatants was quantified using BCA assay (Pierce). Reduced/denatured lysates were separated by SDS-PAGE, and proteins were transferred to nitrocellulose. Even protein loading across lanes was confirmed with Ponceau S staining. Blots were probed with antibodies against P-REX1 (Abcam), HA, HER3 (Santa Cruz), Rac1 (Cytoskeleton), p-AKTS473, p-AKTT308, AKT, p-S6S240/4, p-ERK1/2T202/Y204, p-MEK1/2S217/221, p-IGF-1RβY1135/6/p-InsRβY1150/1, IGF-1R, IRS-1, p-HER3Y1289, or Actin (Cell Signaling). HRP-labeled secondary antibodies (GE Healthcare) and ECL substrate (Pierce) were used for signal detection.
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5

Spheroid Culture and Signaling Pathway Analysis

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Spheroids in suspension or single cell-derived spheroids embedded in Matrigel GFR (5 × 102 cells in 7 μL of Matrigel GFR) were cultured for 7 days in the CTOS organoid medium. Western blotting analyses were performed55 (link) using the following antibodies; The total AKT (#2920), pAKT-S473 (#9271), MEK1/2 (#9122), pMEK1/2-S217/221 (#9121), ERK1/2 (#9107), pERK1/2-T202/Y204 (#4370), GAPDH (#2118), S6 (#2212), p-S6 (#2211), c-Myc (#5605), and NICD (#4147) antibodies were obtained from Cell Signaling Technology. MSI1 (ab52865) antibody was obtained from Abcam. Secondary anti-rabbit (#7074) and -mouse (#7076) antibodies were obtained from Cell Signaling Technology. All antibodies were used at the producer’s suggested concentrations. For the DAPT treatment experiments, C45-4L spheroids were treated with 50 μM of DAPT (Abcam, ab120633) or 0.1% of DMSO (Millipore Sigma, D5879) as control, cultured overnight, and subjected to Western blotting analysis.
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6

Western Blot Analysis of Signaling Proteins

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RIPA buffer (#899900; Thermo Scientific) supplemented with protease/phosphatase inhibitors (#5872S; Cell Signaling) and EDTA solution (0.5mM [final]) was used to lyse cells. Membranes were probed overnight in 5% BSA at 4°C with gentle rocking with antibodies at manufacturers’ recommended dilutions. PLK3 (#4896), pMEK1/2S217/221 (#9121S) and MEK1/2 (#4694S) antibodies were obtained from Cell Signaling. pERKY204 (#SC-7383), ERK1/2 (#SC-292838), beta-actin (SC-47778) and tubulin (#SC-8035) antibodies were obtained from Santa Cruz Biotechnology. GAPDH (#AM4300) antibody was obtained from Ambion. GFP antibody (#ab290) was obtained from Abcam.
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7

Protein Expression Analysis of Frozen Tumors

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Frozen tumor pieces were thawed, washed 2X with cold PBS and pestered to lyse in lysis buffer (50 mM Tris–HCl pH 7.5, 10% glycerol, 150 mM NaCl, 1 mM EDTA, 1% Triton-x-100, 50 mM NaF) supplemented with protease and phosphatase inhibitor cocktails (Bimake, Houston, TX, USA). Lysates were mixed with 4X Laemmli loading buffer and subjected to SDS-PAGE gel electrophoresis and Western blotting. The primary antibodies used were as following: pAkt S473 (#4060), pMEK1/2 S217/221 (#9121), NF-κB p65 (#6956), pPI3K p85 Y458/p55 Y199 (#4228), PI3K p85α (#13666), Rac-1 (#4651), pSTAT3 Y705 (#9145), STAT3 (#9139), Wnt5a/b (#2530) (Cell Signaling Technology, Danvers, MA, USA); Akt (#sc-5298), Bcl-2 (#sc-7382), MEK1/2 (#sc-6250), β-tubulin (#sc-166,729) (Santa Cruz, Dallas, TX, USA); ROR1 6D4 (Dr. Riddel lab, ref. Balakrishana et al. 2016); ROR2 (#565550, BD Biosciences, San Jose, CA, USA). Secondary antibodies: IRDye® 800CW Donkey anti-Mouse IgG, or IRDye® 680RD Donkey anti-Rabbit IgG (LI-COR, Lincoln, NE, USA). Blots were scanned and quantified using Odyssey CLx and Image Studio software (LI-COR). Protein quantification was normalized to β-tubulin expression level for each sample.
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8

Western Blot Analysis of Signaling Pathways

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After seeding and drug treatments, cells were washed with cold PBS and
lysed in RIPA buffer (Pierce #89901) plus phosphatase and protease inhibitors
(Thermo Scientific #1861277, #1861278). Lysates were cleared by centrifugation
at 14000rpm at 4°C and quantified using BCA method (Pierce #23224).
Samples were prepared using LDS+Reducing agent Novex buffers (Invitrogen
#NP0008, #NP0009). 10 to 20μg of lysates were loaded and run on NuPageTM
4–12% Bis-Tris gels (ThermoFisher #NP0321BOX) followed by transfer to
nitrocellulose membranes (Biorad #1620233). Membranes were incubated over night
with the indicated antibodies, washed and incubated again for 45 minutes with
anti-rabbit or anti-mouse secondary antibodies. Detection was performed using
Immobilion Western (Millipore #WBKLS0500).
Primary antibodies were obtained from Cell Signaling Technology and were
used at a concentration of 1:1000: p-Akt S473 (#9271), p-MEK1/2 S217/221
(#9154), p-p44/42 MAPK T202/204 (#9101), Total MEK1/2 (#9122), Total ERK1/2
(#9102), Total AKT (#9272), Total EGFR (#2232S), phospho-EGFR Tyr1068 (#3777S)
and Vinculin (#13901S). DUSP6 antibody was purchased from Abcam (#ab54940) and
used at 1:500 dilution. CyclinD1 antibody was purchased from Santa Cruz
(#sc-718) and used at 1:1000 dilution. Densitometry analyses were performed
using ImageJ software.
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9

Molecular Mechanism of Vemurafenib Response

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Vemurafenib was purchased from ChemieTek. Sunitinib, imatinib, crenolanib and LDE225 were purchased from Selleck Chemicals LLC. MTT was purchased from Sigma. p-AKT (Ser473)-, AKT-, p-PI3K p85 (γ458)-, p-CRAF(S289/296/301)-, p-MEK 1/2 (S217/221)-, p-ERK 1/2 (Thr202/Tyr204)-, ERK1/2-, PDFGRβ-, p-PDGFRα-, PDGFRα-, PTEN-, VEGFR2-, Cleaved Caspase-3 (Asp175)-, p-Histone H3 (Ser10)-, Gli1- and β-actin-specific monoclonal antibodies (mAbs) were purchased from Cell Signaling Technology. The calnexin-specific mAb TO-5 was developed and characterized as described [55 (link)]. PDGFRα-specific shRNA and GFP-shRNA were provided by the- Vector Core Facility of the University of Pittsburgh Cancer Institute.
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