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5 protocols using casp8

1

Western blot analysis of apoptosis markers

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Cells were lysed using RIPA buffer supplemented with protease (ThermoFisher, 78,430) and phosphatase (ThermoFisher, 78,420) inhibitors, scraped, sonicated, and centrifuged (20,000 × g at 4 °C). Protein concentrations in the supernatant were determined using the Micro BCA Protein Assay kit (Thermo), and equal amounts of protein were resolved on pre-made Bis-Tris polyacrylamide gels (Life Technologies). Primary antibodies: pS345 CHEK1 (Cell signaling, #2348 L, 1:1000), pT68 CHEK2 (Cell signaling, #2197 S, 1:1000), pS139 H2A.X (Millipore, 05-636, 1:1000), clvd. Casp8 (Cell signaling, #8592, 1:1000), clvd. Casp9 (Cell signaling, #9502, 1:1000), clvd. Casp3 (Cell signaling, #9662, 1:1000), clvd. PARP (Cell signaling, #5625 P, 1:1000), and anti-actin (Cell Signaling Technology, 9470, 1:10,000). Primary antibodies were stored in 5% BSA (Sigma-Aldrich) and 0.1% NaN3 in TBST solution. Anti-rabbit IgG HRP-linked (Cell Signaling Technology, 7074, 1:2500) and anti-mouse IgG HRP-linked (Cell Signaling Technology, 7076, 1:2500) were used as secondary antibodies. Chemiluminescent substrates (ThermoFisher Scientific, 34,077 and 34,095) and autoradiography film (Denville) were used for detection.
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2

Histological Analysis of Snap-Frozen Tissue

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Histological analysis of snap‐frozen tissue was performed as previously described.(28) Antibodies against cleaved caspase‐3 (Casp3), cleaved caspase‐8 (Casp8; Cell Signaling, Danvers, MA), and self‐made anti‐LCMV monoclonal antibody (clone VL4) were used. Terminal deoxynucleotidyl transferase–mediated deoxyuridine triphosphate nick‐end labeling (TUNEL) staining was performed using the in situ cell death detection kit, fluorescein (Roche) as per manufacturers’ instructions. Images were acquired with the ZEISS LSM 880 or ZEISS Axio Observer Z1 microscopes. Cleaved Casp3, cleaved Casp8, and TUNEL quantifications were analyzed by ImageJ software.
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3

Quantifying Neuroinflammation Markers in Mice

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The brain tissues of mice were collected and lysed with RIPA solution. After electrophoresis, the samples were transferred to PDVF membrane, sealed with 5% skim milk for 1 h, and reacted with primary antibody (NLRP3, 1:1000, Casp8, 1:1000, Gsdmd, 1:1000, Trem2, 1:1000, Cleaved caspase-1, 1:1000, GAPDH, 1:1000, Cell Signaling Technology, USA) at 4 °C overnight. After cleaning, the samples were reacted with goat anti-mice IgG (1:3000; Cell Signaling Technology, Danvers, MA, USA) at room temperature for 1 h.
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4

Anticancer Drug Preparation and Antibody Use

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Cisplatin was purchased from Sigma-Aldrich (St. Louis, MO, USA) and dissolved in normal saline (NS) at a concentration of 5 mmol/L [15 (link)]. Pemetrexed was purchased from Toronto Research Chemicals (Toronto, ON, Canada) and dissolved in dimethyl sulfoxide (DMSO) at a concentration of 10 mmol/L [16 (link)]. Aliquots were stored at -20°C, and stock solutions were diluted to the desired concentrations with growth medium before use. All antibodies used have been previously described [17 (link)]. The antibodies casp8, casp9, PARP, IRE1α and Bip were purchased from Cell Signaling Technology (Danvers, MA, USA). Casp3 antibody was obtained from Imgenex (San Diego, CA, USA). Actin antibody was purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against CHOP and c-FLIP were obtained from Santa Cruz (Santa Cruz, CA, USA) and Alexis (San Diego, CA, USA), respectively. NOXA antibody was purchased from Calbiochem (Merck KGaA, Darmstadt, Germany).
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5

Antibody Expression Analysis in Cells

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The following antibodies were used: CCR5 (Cat# ab65850, RRID:AB_1140936), CXCR4 (Cat# ab124824, RRID:AB_10975635), and SQSTM1 (Cat# ab56416, RRID:AB_945626) from Abcam, CD4 (Cat# 300501, RRID:AB_314069) from BioLegend, ATG5 (Cat# 2630, RRID:AB_2062340), ATG7 (Cat# 2631, RRID:AB_2227783), BIRC2 (Cat# 7065, RRID:AB_10890862), CASP8 (Cat# 9746, RRID:AB_2275120), PARP1 (Cat# 9532, RRID:AB_659884), RIPK1 (Cat# 3493, RRID:AB_2305314), XIAP (Cat# 2045, RRID:AB_2214866) from Cell Signaling Technologies, MAP1LC3B (Cat# NB100-2220) from Novus Biologicals, and ACTB (Cat# A2228, RRID:AB_476697) from Sigma. Whole cell lysates and TNP membranes were prepared, resolved, and proteins detected as previously described 10 (link), 52 (link). Relative densities of the target bands were compared to the reference (ACTB) and were calculated using Fiji from the Max Planck Institute of Molecular Cell Biology and Genetics (Fiji, RRID:SCR_002285) 53 (link).
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