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32 protocols using pe cy5 anti cd4

1

Flow Cytometry for Immune Cell Quantification

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The flow cytometry procedure for identification and quantification of circulating inflammatory and immune cells was based on our previous report [34 (link)]. Prior to sacrificing the animals, peripheral blood mononuclear cells (PBMCs) were obtained from the tail vein using a 27# needle. PBMCs (1.0 × 106 cells) were triple-stained with FITC-anti-CD3 (BioLegend), PE-anti-CD8a (BD Bioscience, San Jose, CA, USA), and PE-Cy™5 anti-CD4 (BD Bioscience, San Jose, CA, USA). To identify CD4+CD25+Foxp3+ regulatory T cells (Tregs), PBMCs were triple-stained with Alexa Fluor® 488-anti-CD25 (BioLegend, San Diego, CA, USA), PE-anti-Foxp3 (BioLegend, San Diego, CA, USA), and PE-Cy™5 anti-CD4 (BD bioscience, San Jose, CA, USA) according to the manufacturer's protocol for the Foxp3 Fix/Perm buffer set. The numbers of CD3+CD4+ helper T cells, CD3+CD8+ cytotoxic T cells and CD4+CD25+Foxp3+ Tregs were analyzed using flow cytometry (FC500, Beckman Coulter, Brea, CA, USA).
Additionally, the numbers of inflammatory cells in circulation [i.e., CD11b/c, LyG6, vascular cell adhesion molecule (VCAM)-1], in ascites [macrophage migratory inhibitor factor (MIF), CD14, CD11b/c, LyG6, CD68/CD80, CD68/CD163], and in ABL (CD11b/c, MIF, Ly6G) were assessed using the flow cytometric method.
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2

Flow Cytometry for Inflammatory Cell Analysis

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The procedure and protocol of flow cytometry for identification and quantification of inflammatory and immune cells were based on our previous report42 (link). Briefly, prior to sacrificing the animals, peripheral blood mononuclear cells (PBMCs) were obtained from the tail vein using a 27# needle. PBMCs (1.0 × 106 cells) were triple stained with FITC-anti-CD3 (BioLegend, San Diego, CA, USA), PE-anti-CD8a (BD Biosciences, San Jose, CA, USA), and PE-Cy™5 anti-CD4 (BD Biosciences). To identify CD4+CD25+Foxp3+ regulatory T cells (Tregs), PBMCs were triple stained with Alexa Fluor® 488-anti-CD25 (BioLegend), PE-anti-Foxp3 (BioLegend), and PE-Cy™5 anti-CD4 (BD Biosciences) according to the manufacturer’s protocol of Foxp3 Fix/Perm buffer set. The numbers of CD3+CD4+ helper T cells, CD3+CD8+ cytotoxic T cells, and CD4+CD25+Foxp3+ Tregs were analyzed using flow cytometry (FC500, Beckman Coulter, Brea, CA, USA). Additionally, the numbers of inflammatory cells (CD11b+/CD86+, CD11b+/CD206+, CD68+/CD80+, CD68+/CD163+, CD11b/c+, Ly6G+) in circulation or in bronchioalveolar lavage (BAL) fluid were also assessed by flow cytometry.
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3

Phenotypic and Functional Profiling of T Cells

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For suppression assays, cells were washed with 0.1% (w/v) sodium azide/phosphate-buffered saline (Mediatech Cellgro) on day 7 of in vitro stimulation and were stained with anti-CD4 PECy5 (BD Pharmingen), anti-CD8 Pacific Blue (Biolegend), and anti-CD25 APCCy7 (BD Pharmingen. For surface phenotyping of cells, bulk PBMCs and enriched CD8+ T cells were stained with anti-CD3 Alexa 700 (BD Pharmingen), anti-CD8 AmCyan (BD Biosciences), anti-CD27 APCCy7 (Biolegend), anti-CD28 APC (BD Pharmingen), CD45RO Pacific Blue (Biolegend), anti-CD62L PECy5 (BD Pharmingen), and anti-CD57 PE (Southern Biotech). For intracellular staining of cytokines, cells were initially activated with 1 μL of leukocyte activation cocktail (BD Pharmingen) for 5 hours. Cells were surface stained with anti-CD8 APC (BD Biosciences), anti-CD4 PECy5 (BD Pharmingen) and anti-CD25 APCCy7 (BD Pharmingen) and permeabilized as described previously. Intracellular staining was performed using anti-IFNγ PECy7 (BD Pharmingen), anti-IL-17A PE (Ebioscience), anti-Granzyme B Alexa 700 (BD Pharmingen) and anti-Perforin Pacific Blue (BD Pharmingen). All cells were resuspended in 1% paraformaldehyde (Electron Microscopy Sciences, Hatfiled, PA) for FACS analysis. Flow cytometric data were acquired on a 4-Laser, 17-color LSRII using FACSDiva software (Becton Dickinson). CFSE was detected in the FITC channel on the LSR.
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4

Identification and Quantification of Immune Cells

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The procedure and protocol of flow cytometry for identification and quantification of circulating and splenic immune cells were based on our previous report [44 (link)]. Briefly, the peripheral blood mononuclear cells (PBMCs) and splenocytes were obtained from the tail vein using a 27# needle. PBMCs and splenocytes (1.0 × 106 cells) were triple-stained with FITC-anti-CD3 (BioLegend), PE-anti-CD8a (BD Bioscience), and PE-Cy™5 anti-CD4 (BD bioscience). The numbers of CD3+CD4+ helper T cells and CD3+CD8+ cytotoxic T cells were analyzed using flow cytometry (FC500, Beckman Coulter).
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5

Regulatory T Cell Phenotyping by Flow Cytometry

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Freshly isolated splenocytes were stained with PE-Cy5 anti-CD4 and PE-anti-CD25 or isotypes rat IgG2a,κ and rat IgM,κ, respectively, for 10 min at 4 °C (BD). Cells were then fixed and permeabilized using the Mouse FoxP3 Buffer Set and then incubated with Alexa Fluor 488 anti-FoxP3 or isotype rat IgG2baccording to manufacturer’s instructions (BD). Flow cytometry was performed immediately or within 24 h of permeabilization using a FACScaliber machine. 1 × 105 gated events were recorded. Results were analyzed with FCS Express software.
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6

Comprehensive Flow Cytometry Antibody Panel

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The following antibodies from BD Biosciences were used for flow cytometry: biotinylated antibodies to CD4 (553728), CD8 (553029), IgM (553436), CD11b (553309), CD138 (553713) and GR-1 (553125); PE-conjugated antibodies to B220 (553090), CD5 (553023), CD11b (557397), IgD (558597), CD138 (553714); APC-conjugated antibodies to CD21 (558658), IgM (550676), IgD (560868), CD11b (553312), CD138 (558626) and GR-1 (553129); FITC-conjugated antibodies to GL7 (553666), IgD (553439); PE-Cy7 conjugated anti-CD11b (552820); Pacific Blue anti-CD3e (558214); PE-Cy5-anti-CD4 (553050) and APC-Cy7-anti-CD8a (557654). From Biolegend: APC-anti-mouse IgG1 (406610), PerCPCy5.5-anti-mouse IgG1(406612), Pacific Blue anti-CD38 (102720), FITC-anti-mouse IgG (405305), APC-anti-mouse IgG (405308), APC-Cy7-anti-mouse IgG (405316). From eBioscience: PerCP-Cy5.5-anti-B220 (45-0452-82), PE-anti-IgM (12-5890-83), PE-anti-CD23 (12-0232-82), Biotin-anti-mouse-IgD (13-5993-85), Streptavidin-PE (12-4317-87), PE-Cy7-streptavidin (25-4317-82). From the Jackson Immunoresearch Laboratories: normal rabbit IgG (015-000-002) or mouse IgG (011-000-002). From Abgent: anti-LC3 (AP1802a) for immunocytochemistry. From Invitrogen: Anti-CoxIV (459600) for immunocytochemistry. From Southern Biotechnology, HRP conjugated anti-mouse IgG or IgM.
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7

Isolation of Murine CD4+ T Cells

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CD4+T cells were isolated from splenic mononuclear cells using magnetic beads for CD4 negative selection (StemCell, Vancouver, BC Canada). The purity of separated cells was analyzed by Flow cytometry analyses using PE-anti-mouse CD3a and PE-Cy5-anti-CD4 (BD Bioscience, San Jose, CA). The purities of isolated CD4+T cells were normally above 75% (Figure S2).
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8

Immunophenotyping of hNSCs and PBMCs

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After 2 days co-culture of hNSCs and PBMCs, we aspirated suspensions contained PBMCs using plastic Pasteur pipette and washed cells for use. For cell surface marker staining, the following fluorochrome-conjugated anti-human antibodies were used (all from BD Biosciences): polyethylene (PE) anti-TCRγδ (B1), FITC anti-CD3 (UCHT1), PE-CY5 anti-CD4 (RPA-T4), PE anti-CD8 (RPA-T8). Cells were incubated with antibodies and washed once with PBS before analysis on a BD FACS Calibur flow cytometer. For Treg cell detection, FITC anti-CD4 (RPA-T4), allophycocyanin (APC) anti-CD25 (M-A251) and PE anti-FOXP3 (259D/C7) were used according to manufacturer’s instructions. For cell sorting, stained cells were sorted on a FACS machine (BD Calibur, USA) and the results were analyzed using FlowJo7.6.1 software.
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9

Suppression of Effector T-cell Proliferation by Regulatory T Cells

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CD4+ CD25+ Treg cells and CD4+ CD25 Teff cells were isolated first using EasySep Mouse CD4+ T-Cell Isolation Kit (Stem Cell), then enriched cells were labeled with PE-Cy5-anti-CD4 and PE-anti-CD25 (BD) and flow sorted on a FACS Vantage (BD). Dendritic cells (DCs) were generated from bone marrow (BM) from either syngeneic (C57BL/6) or allogeneic (BALB/C) mouse strain as previously described (Yan et al., 2009 (link)). CD11c+ DCs from both conditions were purified with mouse CD11c MicroBeads Kit as per manufacturer instructions (Miltenyi biotec). Of 4 × 104 Teff cells from 3–4 months old wild-type C57BL/6 were incubated in the indicated ratios in the T-cell media with Tregs from young and old mice in the presence of 5 × 103 CD11c+ DCs for ~5 days in round bottom 96-well plates. Media were supplemented with 1 μg mL−1 anti-CD3e (BD) when coculturing syngeneic BM-derived and splenic DCs. Anti-IL10 neutralization antibodies or N-acetyl cysteine (NAC), when used, was administered as a bolus to a final concentration of 10 μg mL−1 or 2 mm, respectively, at the start of coculture. Incorporation of 3H-thymidine (1 μCi/well, Perkin Elmer) by proliferating cells was measured during the last 18 h of culture.
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10

Intracellular Cytokine Profiling of Vaccinated Mice

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Intracellular IFN-γ and TNF-α expression levels by immune lymphocytes were measured by flow cytometry similar to that previously described [19 (link)]. Groups of mice i.p. vaccinated with znBAZ, RB51, or PBS were evaluated 21 days after vaccination. For intracellular IFN-γ detection, splenic lymphocytes from individual mice were stimulated in vitro with 109 CFUs of heat-killed RB51 (HKRB51) overnight, followed by 5 ng/ml PMA and 500 ng/ml ionomycin and simultaneously treated with 10 μg/ml brefeldin A (BioVision, Milpitas, CA) during the last 5 h of culture. Cells were then stained with PE-Cy-5 anti-CD4 (BDBiosciences) and Pacific Orange anti-CD8 T cell (Life Technologies) mAbs, washed, and then fixed with IC Fixation Buffer (eBioscience). Subsequently, cells were permeabilized with Permeabilization Buffer (eBioscience), and stained with FITC-labeled anti-IFN-γ (eBioscience) and Brilliant Violent 421-labeled TNF-α (Biolegend). Fluorescence was acquired on LSRFortessa flow cytometer with BD FACSDiva software (BD Biosciences, San Jose, CA, USA). All samples were analyzed using FlowJo software (Tree Star, Ashland, OR, USA).
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