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4 protocols using prostar 215

1

Spectroscopic Characterization of Compounds

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Optical rotations were measured on a Rudolph research analytical AUTOPOL IV spectropolarimeter. IR spectra were recorded with a Bruker ALPHA II FT-IR spectrometer. NMR spectra were obtained with a Bruker Avance III NMR spectrometer equipped with a 3 mm cryogenic probe and operated at 600 MHz for 1H and 150 MHz for 13C. NMR spectra were calibrated to the residual DMSO-d6 solvent signals at δH 2.50 and δC 39.5. The (+)-HRESIMS data were acquired on an Agilent Technology 6530 Accurate-mass Q-TOF LC/MS. High-performance liquid chromatography (HPLC) was performed using a Varian ProStar 215 solvent delivery module equipped with a Varian ProStar 340 UV–vis detector, operating under Star 6.41 chromatography workstation software.
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2

SEC Analysis of Protein-Heparin Interactions

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SEC experiments were carried out on a Varian ProStar 215 solvent delivery system, coupled to a Varian ProStar 320 UV/VIS detector set at a wavelength of 280 nm. Separation was performed using a BioSep 5-μm SEC-s2000 145 Å, 300 × 4.6-mm LC column (Phenomenex, Torrance, CA). 50 mm sodium phosphate buffer, pH 6.65, containing 150 mm NaCl was used as eluent buffer. Flow rate was set at 0.5 ml/min. Proteins were injected at 0.1 mg/ml concentration in the presence or absence of 1 mg/ml low-molecular-mass heparin (commercial name Fragmin®, Pfizer). Molecular masses of proteins were calculated using the calibration curve provided by the manufacturer.
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3

Structural Analysis of Evasin-4 by SEC-MALS

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First, SEC experiments were carried out on a Varian ProStar 215 solvent delivery system coupled to a Varian ProStar 320 UV-visible detector. Separation was performed using BioSep 5 μm SEC-s2000 145 Å, 300 × 4.6 mm LC column (Phenomenex, Torrance, CA, USA). 50 mm sodium phosphate buffer, pH 6.65, containing 150 mm NaCl was used as an eluent at a 0.5 ml/min flow rate. met–Evasin-4 was injected at 0.1 mg/ml concentration and followed by absorbance at λ = 280 nm.
In addition, SEC-MALS was used to determine the oligomeric state of Evasin-4 by injecting 100 μl of protein at 5.3 mg/ml onto a Superdex 75 10/300 gel filtration column (GE Healthcare) in 20 mm Tris, 100 mm NaCl, pH 7.3, at 17 °C. SEC was performed with online static light scattering (miniDAWN TREOS, Wyatt Technology) and differential refractive index determination (Shimadzu RID-10A) on a Shimadzu HPLC system. Protein concentration at elution and massed average molecular mass was determined using standard protocols in the ASTRA6 program (Wyatt). The set-up was calibrated with 100 μl of 5 mg/ml monomeric chicken egg white albumin (Sigma–Aldrich). A refractive index increment (dn/dc) value of 0.185 ml/g was used for Evasin-4.
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4

Spectroscopic Characterization of Compounds

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Optical rotations were measured on a Rudolph research analytical AUTOPOL IV polarimeter. ECD spectra were recorded on a JASCO J-1500 spectrophotometer. UV spectra were measured with a PerkinElmer, Inc. Lambda 465 UV/Vis photodiode array spectrophotometer. IR spectra were recorded with a Bruker ALPHA II FT-IR spectrometer. NMR spectra were obtained with a Bruker Avance III NMR spectrometer equipped with a 3 mm cryogenic probe and operated at 600 MHz for 1H and 150 MHz for 13C. (+)-HR-ESI-MS data were acquired on an Agilent Technology 6530 Accurate-mass Q-TOF LC/MS. HPLC was performed using a Varian ProStar 215 solvent delivery module equipped with a Varian ProStar 340 UV-Vis detector, operating under Star 6.41 chromatography workstation software. A solid phase extraction (SPE) was carried out with a Waters Oasis HLB (6 cc) cartridge.
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