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5 protocols using caspase 3

1

Evaluation of Apoptosis Pathways in Cell Lines

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HaCaT and A549 cells were treated with gZnNPs (0, 25, and 35 μg/ml) for 24 h, and after exposure, the cell lysate was prepared in RIPA buffer (ab156034). The cell lysate was centrifuged at 13000 rpm, 4°C for 30 min, and the supernatant was used for protein expressions. The concentration of protein was evaluated by the Bradford method [11 (link)]. Protein (20 μg) was migrated on the gel and transferred to a PVDF membrane (Bio-Rad, Laboratories Inc., Berkeley, CA, USA). The PVDF membrane was incubated with different mouse monoclonal antibody against β-actin (1 : 12000 dilutions, Abcam, Cambridge, UK), Bcl2 (1 : 500 dilutions, Santa Cruz), Bax (1 : 1000 dilutions, Antibodies-online), Caspase-3 (1 : 500 dilutions, Cayman), and TNF-α (1 : 500 dilutions, Santa Cruz) for 24 h at 4°C.
Secondary antibody HRP-conjugated goat anti-mouse IgG (H + L) antibody (1 : 2000 dilutions Bio-Rad) was used. Immunoreactive bands were detected using an EZ west Lumi plus (ATTO Corporation, Tokyo, Japan), which is a chemiluminescent substrate to detect HRP on the western blotting membrane. The luminescence intensity (optical density) of the target protein bands was quantified using Lumino Graph 2 (ATTO Corporation). All protein expression levels were normalized to the levels of β-actin protein expression in each band.
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2

Protein Expression Changes in Rat Brain

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Rats were sacrificed by decapitation at 4 weeks post-induction (n = 4 per group per time point). The whole brain was collected from each animal. Proteins were separated by 12% SDS-PAGE electrophoresis and blotted onto polyvinylidene difluoride membranes. The membranes were then incubated with primary polyclonal rabbit antibodies against phosphorylated tau (p-tau; 1:400; Thermo Fisher Scientific), LC3BII (1:800; Novus Biologicals), NF-κB (1:800; R&D Systems), CD68/ED1 (1:500; Santa Cruz Biotechnology), ZO-1 (1:800; Santa Cruz Biotechnology), COX-2 (1:1500; Neuromics, Edina, MN, USA), Syn (1:1200; Thermo Fisher Scientific), RhoA (1:500; Upstate Biotechnology), ICAM-1 (1:500; Novus Biologicals), AGT (1:1200; Chemicon), PI3K/p85 (1:500; Thermo Fisher Scientific), STAT3 (1:800; Cayman Chemical), p-AKT (1:800; Abcam), ACH (1:500; Sigma), caspase 3 (1:1000; Cayman Chemical), and CHAT (1:500; Abcam) at room temperature for 12 h. The membranes were then re-probed with a rabbit anti-β-actin antibody (1:5000; Abcam). After incubation with a goat anti-rabbit secondary antibody (1:5000; Santa Cruz), the protein bands were detected using an enhanced chemiluminescence reagent.
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3

Cellular Fractionation and Protein Analysis

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RTCs were harvested in 10-cm2 dishes after the indicated treatment. The cells were partitioned into cytosolic and nuclear fractions by using NE-PERTM nuclear extraction reagents (Pierce, Rockford, IL, USA) with the addition of protease inhibitors, according to the manufacturer’s instructions. Antibodies against PPARγ (SC-7273), Bcl-xL/xS (SC-1041), NFAT3 (SC-13036), NFκB-p65 (SC-372), PGC1α (SC-13067), Sirt1 (SC-15404), pan-acetylated (SC-8649) and Lamin A/C (SC-6215) (1:500 Santa Cruz Biotechnology, Santa Cruz, CA, USA), caspase 3 (#13909; 1:500, Cayman Chemical, Ann Arbor, MI, USA), GAPDH (#LF-PA0018; 1:2000, Ab Frontier, Seoul, Korea), and β-actin (#MABT523; 1:500, Millipore, Burlington, MA, USA) were included in the assay. The cell lysate (50 μg) was electrophoresed on an 8% sodium dodecylsulfate-polyacrylamide gel and then transblotted onto a Hybond-P membrane (GE Healthcare, Hong Kong SAR). The subsequent procedures were as described previously [41 (link)]. Western blot bands were quantified by using the Scion Image Software (Scion, Frederick, MD).
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4

Protein Expression in Mouse Brain

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Mice (n = 5 per time point per group) were sacrificed by decapitation and their striatum and nigra substance were harvested at 2 and 8 weeks post-induction. Total protein was isolated from tissue lysates and then the proteins were separated by 12% SDS-PAGE electrophoresis. Protein bands were transferred onto a polyvinylidene difluoride membrane and probed with rabbit Syn (1:1500; Abcam, Cambridge, MA, USA), Pdyn and anti-PPE (1:1000, Thermo Fisher Scientific, Waltham, MA, USA), TH and CHAT (1:1500; Abcam, Cambridge, MA, USA), c-Fos (1:1000; Abcam, Cambridge, MA, USA), pDARPP-32 (Thr34) and DARPP-32 (1:800; R&D Systems, Minneapolis, MN, USA), CD38 and CD206 (1:500; Santa Cruz Biotechnology), ZO-1 (1:1000; Cayman Chemical, Ann Arbor, MI, USA), LC3B (1:500, Novus Biologicals, Littleton, CO, USA), and caspase 3 (1:1000; Cayman Chemical, Ann Arbor, MI, USA) primary antibodies for 12 h at room temperature. The membranes were then incubated with HRP-conjugated goat anti-rabbit secondary antibody (1:5000; Santa Cruz, CA, USA) for 1 h before band visualization using the ECL Plus detection system (Amersham Pharmacia Biotech) and imaging. Rabbit anti-β-actin antibody (1:5000; Abcam, MA, USA) was used as the internal normalization control.
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5

Oxidative Stress and Inflammatory Markers

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Lung and liver tissues were homogenized in RIPA buffer (Sigma) with a Complete TM protease inhibitor (Roche Diagnostics, Basel, Switzerland) according to the manufacturers' instructions. 8-Isoprostane (Cayman, Ann Arbor, MI, USA), interleukin (IL)-6 (R&D, Minneapolis, MN, USA), caspase-3 (Cayman), IL-1β (R&D), and tumor necrosis factor (TNF)-α activities in tissue lysates were determined in accordance with the manufacturer's instructions. Data obtained from lung and liver tissue lysates were normalized by the total protein.
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