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6 protocols using core 2

1

Mitochondrial Complex Evaluation in Sepsis

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Mitochondria isolation from kidneys of Sham and CLP groups was performed using sucrose containing buffer as described previously [18 (link),19 (link)]. Mitochondrial complexes were extracted from the isolated mitochondria (250 μg) using 10% n-dodecyl-β-D-maltoside and 0.5 M aminocaproic acid (detergent/protein ratio, 2.5 g/g). The mitochondrial extracts (40 μg) were then resolved in a BN-PAGE gel [19 (link),20 (link)] followed by western blotting with 4-HNE (Abcam, 1:500) and Core-2 (Abcam,#ab14745;1:1000).
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2

Mitochondrial Complex Evaluation in Sepsis

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Mitochondria isolation from kidneys of Sham and CLP groups was performed using sucrose containing buffer as described previously [18 (link),19 (link)]. Mitochondrial complexes were extracted from the isolated mitochondria (250 μg) using 10% n-dodecyl-β-D-maltoside and 0.5 M aminocaproic acid (detergent/protein ratio, 2.5 g/g). The mitochondrial extracts (40 μg) were then resolved in a BN-PAGE gel [19 (link),20 (link)] followed by western blotting with 4-HNE (Abcam, 1:500) and Core-2 (Abcam,#ab14745;1:1000).
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3

Quantitative Western Blot for Mitochondrial Proteins

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Skeletal muscle and heart tissues were resuspended in lysis buffer (1% Tx-100, 10 mM Tris-HCI pH 7.6, 150 mM NaCl, 1 mM EDTA) with protease inhibitor and phosphatases (Roche Diagnostic) and then were centrifuged at 11,000× g for 15 min (4 °C). Protein concentration was quantified with Micro BCA Kit (Thermo Fisher Scientific, Waltham, MA, USA). Samples were incubated for 5 min in TC 4X buffer (β-Mercaptoethanol) at 95 °C and 30 µg of protein extracts were separated by SDS-PAGE electrophoresis in 12.5% polyacrylamide gels and transferred to polyvinylidene fluoride (PVDF) membranes (GH Healthcare, Chicago, CA, USA). The following antibodies were used for inmunodetection: NDUFB11 (Abcam, 1:1000, Cambridge, UK), NDUFA9 (Abcam, 1:1000), NDUFV1 (Santa Cruz Biotechnology, 1:1000, Dallas, TX, USA), NDUFB8 (Abcam, 1:500), Core2 (Abcam, 1:2000) and COXII (Abcam, 1:1000). SDHA (Abcam, 1:10,000) was used as loading control. Secondary antibodies conjugated to horseradish peroxidase (Cell Signaling Technologies, Danvers, MA, USA) were used to detect the primary antibodies and the reactions were developed with ECL Prime Western Blotting Detection Reagent (GE Healthcare, Amersham, UK) in a ChemiDoc™ MP Imaging System (Bio-Rad, Hercules, CA, USA). The optical densities of the immunoreactive bands were measured using NIH ImageJ software v1.8 (Wayne Rasband, NIH, Bethesda, MD, USA).
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Immunoblotting of Mitochondrial Proteins

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Reagents were purchased from Merck-Life Sciences (Gillingham, UK) or Thermo Fisher Scientific (Loughborough, UK). Primary antibodies for: phosphor-AMPK (T172), AMPK, phospho-AKT (Ser473), AKT, phosphop44/42 (ERK1/2) (Thr202/Tyr204), ERK1/2,c-CBL, CAP, CBL-b, were from Cell Signaling (Leiden, NL); β-TUBULIN and ACTIN from Merck-Sigma-Aldrich; NDUFA from Thermo Fisher; CORE2, COX5A and SDHA from Abcam. HRP-conjugated secondary antibodies were from Thermo Fisher.
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5

Native PAGE Analysis of OXPHOS Subunits

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Native PAGE was carried out as previously reported [51 (link)]. Briefly, 3–13% acrylamide gradient gels were loaded with 60 μg of mitochondrial protein and processed as described. After electrophoresis, proteins were transferred to a PROTAN® nitrocellulose membrane (Schleicher and Schuell, Bioscience GmbH, Dassel, Germany) at 35 V, overnight, and probed with specific antibodies raised against the following human OXPHOS subunits: NDUFA9, CORE2, COX2, COX5A, and SDHA (from Mitosciences, Eugene, OR, USA). Peroxidase-conjugated anti-mouse IgG was used as a secondary antibody (Molecular Probes, Thermofisher Scientific, Gilligham, UK). The signal was detected with ECL® plus (Amersham Biosciences, Freiburg, Germany).
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6

Comprehensive Western Blot Analysis

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Western blot was performed using primary antibodies raised against COX7A2L (ProteinTech), Myc (Origene), turbo-GFP (Origene), HA (Roche), β-actin (Sigma), and against the following human OXPHOS subunits: NDUFS1 (GeneTex); NDUFA9, NDUFB8, CORE2, RISP, CYC1, UQCRB, UQCRQ, COX1, COX4, COX5A, COX6C, SDHA, SDHB (Mitosciences); and COX5B (Santa Cruz). Peroxidase-conjugated anti-mouse and anti-rabbit IgGs were used as secondary antibodies (Molecular Probes). Immunoreactive bands were detected with an ECL prime Western Blotting Detection Reagent (Amersham) in a ChemiDoc™ MP Imager (Biorad). Optical densities of the immunoreactive bands were measured using the ImageLab™ (Biorad) and ImageJ analysis softwares.
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