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6 protocols using handy sonic

1

Quantification of Cellular Cysteine Levels

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Cells cultured in 48-well plates at LD or HD were collected with PBS. After centrifugation, the cells were suspended in H2O and disrupted by ultrasonication on ice with TOMY Handy Sonic (model UR-20P) at the amplitude of 20% for 1 min. The cytosolic cysteine was measured using the cysteine assay kit (MAK255; Sigma–Aldrich) according to the manufacturer's instructions. The fluorescence was measured using the Tecan microplate reader. A black 96-well plate was used to prevent light from leaking into the adjacent wells. Protein concentration was measured using the Protein Assay BCA Kit (Nacalai Tesque, Inc).
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2

Immobilizing Sporulating Yeast Cells for Live Imaging

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After overnight incubation on ME plates, cells were re-suspended in EMM-N+5S medium. To disperse sporulating cells, suspensions were subjected by brief sonication (Handy Sonic; Tomy Seiko, Tokyo, Japan); 20 µl of the cell suspension was then dropped onto lectin (0.2 mg/ml; Sigma-Aldrich, Tokyo, Japan)-coated 35-mm glass-bottomed culture dishes (MatTek, Ashland, MA, USA) to immobilize cells (Asakawa and Hiraoka, 2009 (link)). For imaging Latrunculin A-treated cells, Latrunculin A (Thermo Fisher Scientific, Tokyo, Japan) was added at a final concentration of 1 µM prior to cell immobilization. Cells undergoing sporulation were selected for live-cell imaging.
A DeltaVision microscope equipped with a CoolSNAP HQ2 charge-coupled device (GE Healthcare, Tokyo, Japan) was used for image acquisition. Optical section images were acquired at 0.5-µm focus intervals using an oil-immersion 60× objective lens (PlanApoN60x OSC, NA1.4; Olympus, Tokyo, Japan). Images were processed using the de-noising algorithm (Boulanger et al., 2009 (link)) and by constrained iterative deconvolution (Agard et al., 1989 (link)).
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3

Tyrosinase Activity Measurement in B16 Cells

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Tyrosinase activity was measured according to a previously described method, with slight modifications [24 (link),25 (link)]. α-MSH alone or simultaneously with LHMW was added to B16 cells seeded in a 6-well plate and cultured for 24 h. After B16 cells were washed with PBS, 200 μL of PBS containing 1% Triton X-100 was added to each well. The cells were collected and homogenized with an ultrasonic homogenizer (Handy Sonic, TOMY SEIKO Co., Ltd., Tokyo, Japan) on ice and then centrifuged (11,000× g, 20 min, 4 °C). Then, 100 μL of PBS containing 0.1% L-DOPA was added to 30 μL of the supernatant, and the mixture was incubated at 37 °C for 30 min. Absorbance at 492 nm was measured using a microplate reader. Tyrosinase activity was normalized by protein content and expressed as a percentage of the control.
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4

Protein Extraction from B16 Cells

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α-MSH alone or simultaneously with LHMW was added to B16 cells seeded in a 6-well plate and cultured for 3 h or 24 h. After washing B16 cells with PBS, 500 μL of RIPA buffer was added, and the cells were collected using a cell scraper. The cell suspension solution was placed on ice for 30 min, homogenized by an ultrasonic homogenizer (Handy Sonic, TOMY SEIKO Co., Ltd.), and centrifuged (15,000× g, 15 min, 4 °C). The obtained supernatant was used as a sample solution for Western blotting.
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5

In Vivo Tumor Imaging Protocol

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All animal experiments were approved by the Animal Care and Use Committee of Tokyo Institute of Technology, and performed in accordance with the Guidelines for the Care and Use of Laboratory Animals as stated by Tokyo Institute of Technology. Four-week-old female BALB/c nude mice were obtained from Charles River Laboratories Japan, Inc. (Yokohama, Japan). To make a subcutaneous tumor model, 1 × 106 U87MG cells were injected subcutaneously in the left dorsum of each mouse. When the tumor volume reached approximately 400 mm3, PSs were intravenously injected to the mice (10 μg of 700DX/mouse), and fluorescence of 700DX in the body was imaged at indicated time points using IVIS (ex/em = 710 nm/780 nm). Also, to quantify the accumulated amount of 700DX, tumors and organs were taken out from the mice and gently washed by PBS at indicated time points. After removing the excess fluid by tissue paper, the tumors and organs were mixed with Passive Lysis Buffer, and homogenized by a Handy Sonic (TOMY SEIKO Co., Ltd., Tokyo, Japan). The homogenized solutions were transferred to black 96 well plates, and the fluorescence of 700DX was quantified using IVIS (ex/em = 710 nm/780 nm).
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6

Western Blot Analysis of Cellular Proteins

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IMS32 cells were seeded at a density of 9 × 103 cells/cm2 and maintained for 1 h under each condition described as Measurement of ROS production. Western blot analysis was performed as previously described44 (link) with slight modifications. Briefly, cells were dissolved in RIPA buffer (Wako) supplemented with protease inhibitor cocktails (Takara Bio Inc, Shiga, Japan). The cell lysate was sonicated using a handy sonic (TOMY SEIKO Co., Ltd., Tokyo, Japan). Protein electrophoresis and transfer were conducted using NuPAGE system (Thermo Fisher). Target proteins were visualized using the following antibodies: mouse anti-β-actin monoclonal antibody (1:2000; Sigma-Aldrich)43 (link); goat anti-AR polyclonal antibody (Santa Cruz Biotechnology, Inc., Santa Cruz, TX, USA)43 (link); rabbit anti-PARP polyclonal antibody (1:1000; Cell Signaling Technology, Beverly, MA, USA); horseradish peroxidase-conjugated anti-mouse IgG, anti-rabbit IgG and anti-goat IgG (1:2000, MBL Corp., Ltd., Nagoya, Japan). Bands were visualized using ECL plus Western blotting detection kit (GE Healthcare). The signal intensity was quantified using chemiluminescence imaging system EZ capture II (ATTO, Tokyo, Japan), and the relative intensity of each protein was expressed as the intensity of each protein divided by the intensity of β-actin.
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