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4 protocols using radioimmunoprecipitation assay reagent

1

Photodynamic Therapy Protein Analysis

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Following treatment with 3, 6 or 15 μM TMPyP4 for 4 h and laser treatment, the cells were incubated for an additional 48 h prior to the collection cells for protein extraction. The examination of the expression levels of MCM2 and CA-IX was then performed separately. The laser energy density was set at 6 J/cm2 and total protein was extracted with the radioimmunoprecipitation assay reagent in the presence of phosphatase protease inhibitors (Beyotime Institute of Biotechnology) and the bicinchoninic acid assay kit (Beyotime Institute of Biotechnology) was used to measure the protein concentration. The protein (50 μg) was separated by SDS-PAGE and transferred onto a polyvinylidene fluoride membrane using wet transfer apparatus (Bio-Rad, Hercules, CA, USA). The membranes were then blocked with 5% skimmed milk and incubated overnight at 4°C with the primary antibodies, followed by incubation with the secondary antibodies labeled with HRP. Next, the protein bands were visualized using an enhanced chemiluminescence kit (Millipore, Billerica, MA, USA) and the protein levels were detected using the chemiluminescence reader, ImageQuant™ LAS4000 (GE Healthcare, Pittsburgh, PA, USA), and analyzed by ImageJ software (US National Institutes of Health, Bethesda, MD, USA).
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2

Western Blot Analysis of TRPV1, SP, and CGRP

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Following the manufacturer's instructions, total proteins were extracted using radioimmunoprecipitation assay reagent (Beyotime Institute of Biotechnology, Haimen, China), the bicinchoninic acid assay (Beyotime Institute of Biotechnology) was used to determine concentration of the protein lysate. Following denaturation in loading buffer, the protein lysate was separated by 15% SDS-PAGE gel and transferred onto nitrocellulose membranes (EMD Millipore, Billerica, MA, USA). The membranes were blocked with 5% non-fat milk for 1 h and then incubated with the primary antibody against TRPV1 (1:2,000), SP (1:500), CGRP (1:500) and β-actin (1:4,000; ab8229; Abcam) overnight at 4°C. Following washing in TBS containing 1% Tween-20 (TBST), the membranes were incubated with an anti-rabbit horseradish peroxidase-conjugated secondary antibody (1:5,000; sc2357; Santa Cruz Biotechnology, Inc.) for 1 h at room temperature. Following three washes with TBST, the blots were visualized using an electrochemiluminescence system (Image Quant LAS 4000 mini analyzer; General Electric, Fairfield, CT, USA) with Image Quant LAS 4000 mini control software (version 1.2; General Electric). The relative band intensities were analyzed using Image Lab software (version 4.0; Bio-Rad Laboratories, Inc., Hercules, CA, USA). The experiment was repeated three times.
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3

Western Blot Analysis of Pericyte Proteins

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Total protein was extracted from pericytes using radio immunoprecipitation assay reagent (Beyotime Biotechnology, Shanghai, China) containing 100 μg/mL phenylmethylsulfonyl fluoride (Solarbio) and quantified using a bicinchoninic acid protein assay kit (Solarbio). Protein samples were denatured, separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and transferred onto a polyvinylidene fluoride membrane (EMD Millipore Corp., Burlington, MA, USA). The membranes were then blocked with a blocking solution (QuickBlock, Beyotime Biotechnology) at room temperature for 30 minutes, and then incubated with primary antibody against pro-caspase-1 (1:1000, rabbit, Cat# ab179515, Abcam), Nod1 (1:500, mouse, Cat#sc-398696, Santa Cruz), IL-1β (1:500, rabbit, Cat# ab9722, Abcam), CD9 (1:2000, rabbit, Cat# ab92726, Abcam), CD81 (1:5000, rabbit, Cat# ab109201, Abcam), CD63 (1:500, mouse, Cat#sc-5275, Santa Cruz) or glyceraldehyde-3-phosphate dehydrogenase (GAPDH; mouse, 1:1,0000, Cat# AC033, ABclonal, Wuhan, China) at 4°C overnight. The membranes were incubated with secondary goat anti-rabbit or mouse horseradish peroxidase-linked antibody (1:1000, Abbkine, Cat# A21220 or Cat# A25012) at room temperature for 1 hour. Finally, target bands were visualized using an enhanced chemiluminescence western blot kit (Thermo Fisher Scientific) and semi-quantified using ImageJ software.
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4

Quantitative Protein Extraction and Analysis

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Total protein extraction from tissues and cell lines was implemented in Radio-Immunoprecipitation assay reagent (Beyotime Biotechnology Co., Ltd., Shanghai, China) with protease inhibitor phenylmethylsulfonyl fluoride (Sigma-Aldrich). The protein sample (20 μg) at the same amount was separated via sulfate polyacrylamide gel electrophoresis, and transferred to Polyvinylidene fluoride films (Millipore Corporation, Billerica, Massachusetts, USA) [18 (link)]. After blocking in 5% skimmed milk, the films were received with incubation with the following primary antibodies (Abcam Inc., Cambridge, MA, USA): MAPRE1 (ab50188), GAPDH (ab8245) at 4°C overnight. After wash with phosphate buffer saline (PBS) buffer for 3 times at room temperature, the films were received with incubation with secondary antibody (Abcam) for 120 minutes. At last, the protein bands were received with visualization on electrogenerated chemiluminescence system (GE Healthcare Bio-science, U.S.) and quantification was via Image J software with GAPDH as an internal reference.
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