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10 protocols using microscint 0

1

NMDA Receptor Binding Assay with Linalool and Linalyl Acetate

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Affinity for native NMDA receptors was determined using 2 nM [3H]-CGP 39653 (Sills et al., 1991 (link)) with some modification. On the day of the assay, frozen membranes were quickly thawed and homogenized in 30 volumes of ice-cold Tris-HCl buffer, pH 7.4 (50 mM containing 2.5 mM CaCl2), and centrifuged (48,000 × g for 10 min). This step was repeated three times. The final pellet was re-suspended in ice-cold buffer, corresponding to approximately 0.4–0.5 mg protein/ml. Binding was carried out in aliquots consisting of 25 μL [3H]-CGP 39653, 25 μL test solution, and 200 μL membrane suspension and incubated at 0° for 60 min. Non-specific binding was determined using 1 mM (S)-Glu. Binding was terminated by filtration through Whatman GF/C filters using a 96-well Packard Filter-Mate Cell Harvester and filters were washed with 3 × 250 μL of ice-cold buffer. After drying, 30 μL Microscint 0 (Perkin-Elmer) per well was added and the filter was counted on a Topcounter (Perkin-Elmer). Linalool and linalyl acetate were also tested in this assay.
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2

Characterization of Gα-Coupled GPCR Activation

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Membranes were prepared from Sf9 cells expressing Gαsβ1γ2 and β2AR. Membranes (~15 μg) were pretreated with GDP (final assay concentration of 1 μM) in a GTPγS assay buffer (20 mM HEPES, pH 7.4, 100 mM NaCl, 10 mM MgCl2, and 1 mM ascorbic acid) and different concentrations of agonist (Epi, c-Epi, NorEpi, c-NorEpi, Iso or c-Iso) for 10 min at room temperature before adding [35S]GTPγS (for a final concentration of 0.1 nM). The assay was incubated at 30 oC for 30 min before stopping by rapid filtration through GF/B Unifilter plates (Whatman) and washing with ice-cold assay buffer. Filter plates were dried before adding Microscint 0™ and counting bound [35S]GTPγS (Perkin Elmer) using a TopCount™ (Perkin Elmer). Data were analyzed using Prizm 6.0 (GraphPad, LLC, CA). Figures show the combined results from three separate experiments performed in duplicate.
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3

Radioligand Binding Assay for Beta-Adrenergic Receptors

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In a polypropylene 96 well plate, binding assay buffer or propranolol (50 μM final for nonspecific binding), [3H] dihydroalprenolol (2 nM final), and membranes (5 μg per well) were plated in order and incubated for 2 hours at room temperature to reach equilibrium. GF/C filterplates were prepared with 0.3% polyethylenimine (PEI) to minimize nonspecific binding. Samples were transferred to the filterplates, washed with cold assay buffer, and dried overnight. Each well was counted in Microscint 0™ (Perkin Elmer) for 1 minute in triplicate.
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4

Cell Proliferation Assay for Anticancer Drugs

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Example 5

Cell Proliferation Assay

Cancer cells were cultured in 96-well white plates (Perkin Elmer). They were synchronized for 24 hours in serum-deprived medium. After incubation of cells with unconjugated drugs (docetaxel, cabazitaxel, doxorubicin) or with drug-Katana peptide conjugates for 2 or 3 days, all media was aspirated and cells were pulse-labeled for 4 hours at 37° C./95% O2/5% CO2 with media containing 2.5 μCi/mL [methyl-3H] thymidine (Perkin Elmer). Cells were washed, fixed, and dried before addition of scintillation fluid (Microscint 0, Perkin Elmer). After 24 hours, cell-associated tritium was quantified by counting on a plate reader (TopCount, Perkin Elmer). Incorporated [3H] thymidine was plotted for each drug concentration.

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5

Allosteric Modulator Binding Assay

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Cell membranes from FreeStyle 293 cells transiently expressing human M1R were incubated with T‐495 or MK‐7622 (0.1‐30 μmol/L), ACh (0.003‐3000 μmol/L), and 4 nmol/L [3H]‐pirenzepine (PerkinElmer) in assay buffer (20 mmol/L HEPES, 100 mmol/L NaCl, 10 mmol/L MgCl2, and 0.1% fatty acid free BSA) for 2 hours at room temperature. The binding was terminated by filtration through GF/C filter plates (PerkinElmer) using a cell harvester (PerkinElmer) and five washed with 300 μL of 50 mmol/L Tris‐HCl. The GF/C plates were dried at 42°C; then, 25 μL of microscint 0 (PerkinElmer) was added. Radioactivity was counted using Topcount (PerkinElmer). Nonspecific binding was defined in the presence of 10 μmol/L atropine. To calculate the cooperativity of a PAM, the [3H]‐pirenzepine binding assay data were fitted to the allosteric ternary complex model,35 using GraphPad Prism 5 software: Y=CKC+αBC[B][C]KBKC1+AKA+BKB+CKC+αAB[A][B]KAKB+αBC[B][C]KBKC
where Y is the fractional specific [3H]‐pirenzepine binding; [A], [B], and [C] are the concentrations of ACh, a PAM, and [3H]‐pirenzepine, respectively; KA, KB, and KC are the equilibrium dissociation constants of ACh, a PAM, and [3H]‐pirenzepine, respectively; and αAB and αBC are the cooperativities between a PAM and ACh or [3H]‐pirenzepine, respectively.
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6

Radioligand Binding Assay for NTS Receptor

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125I-NTS Binding was assessed in microconic tubes in a 400 µL volume: 30 µg of cell membranes were mixed in Tris–HCl (50 mM, pH 7,4) supplemented with BSA (0.2%) with a concentration range of 125I-NTS (0 to 4 nM) and left to incubate for 60 min. To assess the non-specific125I-NTS binding the same binding mix was supplemented with cold NTS (10 µM). The binding reactions were terminated by filtration onto GF/C filter plate (PerkinElmer, 6005174) with a harvester filtration system (Filtermate Harvester Packard, PerkinElmer), followed by washes with Tris–HCL (50 mM, pH 7.4) and allowed to dry. MicroScint-0 (20 µL, PerkinElmer, 6013611) was added to each well and 125I radioactivity was measured on TopCount (Packard, PerkinElmer, NXT). The Bmax is calculated as follow M = count in cpm / 10-9/2200 Ci/mmol/0.6/2.2/400 µL/decay factor then calculated Bmax value in fmol/mg = concentration in M*0.0004*1015/mg cell membrane proteins.
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7

Rac Expression Impact on P. aeruginosa

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The impact of Rac expression on P. aeruginosa PAO1 transcription was investigated using tritium-labelled uridine precursors, as described previously [31 (link)]. Briefly, an exponentially growing culture (OD600 of 0.3) was labeled for 10 min with 1 μCi/mL (5,6-3H)-uridine (PerkinElmer, Waltham, MA, USA). Samples were taken 0, 10, 30 and 60 min after the induction of Rac with 1 mM IPTG and precipitated in 5% ice-cold trichloroacetic acid (TCA). The precipitate was transferred to a Unifilter-96 GF/C (PerkinElmer) using a Filtermate 96 Harvester (Packard) and washed. After the addition of MicroScint 0 (PerkinElmer), the radioactive signal was measured with a TopCount NXT Microplate Scintillation Counter (PerkinElmer). The experiment was repeated on three independent occasions. Non-induced cultures were grown in parallel to permit normalization for each timepoint.
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8

Radioligand Binding Assay for Dopamine Receptor

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Membranes were prepared from Sf9 cells co-infected with Gαi1β1γ2 and wild-type human DRD2long (DRD2WT) as described31 (link). Membranes (7–10 μg) were pretreated with or without antibody fragment scFv16 (1 μg/10 μg membranes) for 30 min at room temp and then incubated for 2 hr at 30oC in binding buffer (20 mM HEPES, pH 7.4, 100 mM NaCl, 1 mM ascorbic acid, 0.001% BSA, 100 nM GDP) and 0.03 – 1.6 nM [3H]spiperone (for saturations) or with 0.13 nM [3H]spiperone (for competitions) along with varying concentrations of dopamine (or with 20 μM (+)butaclamol to determine non-specific binding). Samples were subject to rapid filtration through GF/B Unifilter™ plates (Packard) and rinsed with ice cold binding buffer to remove free [3H]spiperone. Filter plates were dried before adding Microscint 0™ (Perkin Elmer) and counting bound [3H]spiperone using a TopCount™ (Perkin Elmer). All data were analyzed using Prism (Graphpad Software Inc, San Diego CA).
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9

Cell Proliferation Assay for Cancer Cells

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Example 5

Cell Proliferation Assay

Cancer cells were cultured in 96-well white plates (Perkin Elmer). They were synchronized for 24 hours in serum-deprived medium. After incubation of cells with unconjugated drugs (docetaxel, cabazitaxel, doxorubicin) or with drug-Katana peptide conjugates for 2 or 3 days, all media was aspirated and cells were pulse-labeled for 4 hours at 37° C./95%/O2/5%/CO2 with media containing 2.5 ρCi/mL [methyl-3H] thymidine (Perkin Elmer). Cells were washed, fixed, and dried before addition of scintillation fluid (Microscint 0, Perkin Elmer). After 24 hours, cell-associated tritium was quantified by counting on a plate reader (TopCount, Perkin Elmer). Incorporated [3H] thymidine was plotted for each drug concentration.

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10

Radioligand Binding Assay for Dopamine Receptor

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Membranes were prepared from Sf9 cells co-infected with Gαi1β1γ2 and wild-type human DRD2long (DRD2WT) as described31 (link). Membranes (7–10 μg) were pretreated with or without antibody fragment scFv16 (1 μg/10 μg membranes) for 30 min at room temp and then incubated for 2 hr at 30oC in binding buffer (20 mM HEPES, pH 7.4, 100 mM NaCl, 1 mM ascorbic acid, 0.001% BSA, 100 nM GDP) and 0.03 – 1.6 nM [3H]spiperone (for saturations) or with 0.13 nM [3H]spiperone (for competitions) along with varying concentrations of dopamine (or with 20 μM (+)butaclamol to determine non-specific binding). Samples were subject to rapid filtration through GF/B Unifilter™ plates (Packard) and rinsed with ice cold binding buffer to remove free [3H]spiperone. Filter plates were dried before adding Microscint 0™ (Perkin Elmer) and counting bound [3H]spiperone using a TopCount™ (Perkin Elmer). All data were analyzed using Prism (Graphpad Software Inc, San Diego CA).
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