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Immunoblotting and Nuclear Fractionation

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Cell lysates were prepared in RIPA buffer and immunoblotting was performed as previously described (19 (link)). Nuclear fractionation was performed using the REAP cellular fractionation method, as described in (35 (link)). Antibodies used were as follows: SPHK1 (Bethyl Laboratories, Montgomery, TX), SGPL1 and HIF1α (Abcam, Cambridge, MA), HIF2α (Novus Biologicals, Littleton, CO), phospho-AKT (S473), AKT, SOX2, phospho-AMPK (T172), AMPK, c-MYC, OCT-1, PKM1/2, β-Tubulin, Histone H3, cleaved caspase 3, Snail, V5-tag and β-Actin (Cell Signaling Technology, Beverly, MA).
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2

HIV-1 BaL Infection Pathway Analysis

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HIV-1 BaL was obtained from the NIH AIDS Research and Reference Reagent Program, National Institute of Allergy and Infectious Diseases, NIH. The HIV-1 BaL strain has been shown to efficiently infect, via the CCR5 co-receptor, and replicate within CD4+ T-cells49 (link). Argonaute-1, p-NFκB, NFκB, p-ERK, p-Src, p-Akt, NFAT1, p-CREB, CREB, Oct-1, Ubiquitin, and β-Actin antibodies were obtained from Cell Signaling Technology (Danvers, MA). GW182, D1DR, D2DR, D3DR, D4DR, Sigma-1 Receptor, and GAPDH antibodies were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). FITC-conjugated p24 GAG (6604665) antibody was obtained from Beckman Coulter, Inc. (Brea, CA). PE-conjugated CD45RO, PE-conjugated HLA-DR, FITC-conjugated CD45RA, FITC-conjugated CD25, FITC-conjugated CD69, PE isotype control, and FITC isotype control antibodies were purchased from Biolegend (San Diego, CA). p-NFAT1 antibody was obtained from Thermo Fisher Scientific (Waltham, MA). Fluo-4, AM was purchased from Invitrogen (Carlsbad, CA). Methamphetamine hydrochloride and sigma-1 receptor inhibitor (BD1047) were purchased from Sigma Aldrich (St. Louis, MO).
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