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Radicicol

Manufactured by Merck Group
Sourced in Germany

Radicicol is a small molecule compound that functions as a heat shock protein 90 (Hsp90) inhibitor. It has been used as a research tool to study the role of Hsp90 in various cellular processes. Radicicol binds to the N-terminal domain of Hsp90 and inhibits its ATPase activity, which can lead to the destabilization and degradation of Hsp90 client proteins.

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26 protocols using radicicol

1

Radicicol Pretreatment for NOC-18 Assay

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Hsp90 inhibitor radicicol (Sigma # R2146) was used to pretreat cells for 6 h before treatment with NOC-18 at a final concentration of 10 μM. After pretreatment, cells were maintained in the presence of 10 μM radicicol during NOC-18 treatment for the indicated time points and doses.
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2

Radicicol Treatment of Worms

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Worms were grown in the same way as described earlier but at 20 °C. Radicicol (Sigma-Aldrich) was dissolved in DMSO and then added to S-medium to the final concentration of 15 µg/ml Radicicol and 0.5% DMSO. Solution containing no Radicicol and 0.5% DMSO was used as control.
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3

Synchronous Parasite Treatments

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The 17-AAG (Sigma, St. Louis, MO, USA) and Radicicol (Sigma, St. Louis, MO, USA) treatments were given to the synchronous parasite cultures at the ring stage. Parasites were harvested at the late trophozoite/early schizont stage for RNA isolation and protein preparation.
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4

Culturing Chlamydomonas reinhardtii for Experiments

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The C. reinhardtii wild-type strain was obtained from the Freshwater Algae Culture Collection at the Institute of Hydrobiology (FACHB-collection, Chinese Academy of Science, Wuhan, China). C. reinhardtii cells were cultured in liquid tris-acetate phosphate media (TAP) under 100 μmol (photons) m−2 s−1 white light with a 12 h photoperiod at 25 °C. Three-day-old cells in the logarithmic growth phase were collected for further experiments [26 (link)].
Fumagillin, mevastatin, radicicol, wortmannin, 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU), dimethyl sulfoxide (DMSO), and other chemical agents were purchased from Sigma-Aldrich (Shanghai, China). Four mycotoxins and DCMU stock solutions were dissolved in 100% DMSO and further diluted with sterile water. The final concentration of DMSO in the working solutions of all chemical agents was less than 1% (v/v).
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5

Spectrophotometric ATPase Assay for Hsp90

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ATPase assays were performed by a spectrophotometric assay using an enzymatic ATP regenerating system89 (link). 10 μM of human Hsp90 and 3 μM of yeast Hsp90 were used in 40 mM Hepes (pH 7.5), 150 mM KCl, 5 mM MgCl2. Measurements were performed at 30 °C for the yeast proteins and at 37 °C for the human homologues. To substract the background activity, 100 μM radicicol (Sigma, Germany) were added at the end of the measurement. The data were analyzed by linear regression using Origin 8.0 and for ATP-binding, data were fitted according to the Michaelis–Menten equation. For the activation by Aha1, a low salt assay buffer (40 mM Hepes (pH 7.5), 20 mM KCl, 5 mM MgCl2) was used, as the affinity between Hsp90 and Aha1 is salt sensitive57 (link).
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6

ATPase Activity Measurement Protocol

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ATPase activities were measured using a regenerating ATPase assay as described before25 (link). In this coupled enzyme assay, the reduction of NADH is detected by the decrease of absorbance at 340 nm using a Cary 50 Bio UV/VIS spectrophotometer (Varian). The assays were performed in 50 mM Hepes (pH 7.5), 50mM KCl, 5mM MgCl2 and 2 mM ATP. ATPase activity was measured at 30 °C using 2 μM yHsp90 and 2 μM Sti1 variant in a total volume of 150 μl. The ATPase reaction was started by adding 2 mM ATP. 100 μM Radicicol (Sigma Aldrich) was used to inhibit Hsp90 ATPase. The remaining ATPase activity in the presence of Radicicol was subtracted from the total activity.
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7

Transfection of 293T Cells Using Lipofectamine

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The human embryonic kidney cell line 293T (Graham et al., 1977 (link)) was grown in high-glucose DMEM supplemented with 10 % fetal bovine serum (FBS). DNA transfection in 293T cells was performed using Lipofectamine 2000 reagent (no. 11,668,019; Thermo Fisher Scientific) (Dalby et al., 2004 (link)) according to the manufacturer's protocols. Generally, cells were harvested 24 h after transfection to analyze the expression and the protein localization of transfected genes. MG132 (no. C2211; Sigma-Aldrich), chloroquine diphosphate (no. ab142116; Abcam), and radicicol (no. R2146; Sigma-Aldrich) were purchased commercially.
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8

Genetic Analysis of Yeast Stress Response

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All yeast strains are isogeneic to W303, but contain the additional met2 and lys2 mutations [5] (link), [57] (link) (Table 1). Yeast cells were grown in either yeast extract-peptone-dextrose (YPD- 1% Bacto yeast extract, 2% peptone, and 2% dextrose) or defined synthetic complete media supplemented with 2% dextrose and were transformed by lithium acetate methods. Growth was examined by spotting 10-fold serial dilutions of yeast cultures on appropriate media, followed by incubation for two days at 25°C, 30°C or 37°C. Yeast strains containing deletions or mutation of SSA1-4 and SSE1 genes were generous gifts from Dr. Elizabeth Craig (University of Wisconsin-Madison), and Kevin Morano (University of Texas Medical School at Houston), respectively. Radicicol was obtained from Sigma.
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9

Antifungal Susceptibility Profiling

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Susceptibility of wild-type and resistant strains to AmB, AmBAU, AmBMU, tert-butyl peroxide (Sigma-Aldrich), geldanamycin and radicicol (A.G. Scientific) was determined in flat bottom, 96-well microtiter plates (Costar) using a broth microdilution protocol adapted from CLSI M27-A3. Overnight cultures (14–20hr) were grown at 30°C in YPD, and approximately 5×103 cells were seeded per well. For AmB, AmBAU, and AmBMU, MIC assays were performed at 37°C in RPMI buffered with MOPS (0.165M) with 10% fetal bovine serum (Sigma-Aldrich) added; for tert-butyl peroxide, geldanamycin, and radicicol, MIC’s were determined in YPD at 30°C. MIC’s were determined after 24h incubation as the concentration of compound resulting in no visible growth in wells. For quantitative display of growth at drug dilutions, OD600 was measured in a spectrophotometer (Tecan) and displayed as heat maps using Java TreeView 1.1.3 (http://jtreeview.sourceforge.net).
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10

TRAIL and PDK3 Inhibitor in iPSC Reprogramming

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During the iPSC reprogramming process, human TRAIL recombinant protein (R&D Systems; 50ng/ml or 100ng/ml), human TRAIL polyclonal antibody (R&D Systems; 75ng/ml or 50ng/ml) or PDK3 inhibitor Radicicol (Sigma, Kato et al., 2007 (link); 36.5ng/ml) were added to OSLN-infected fibroblasts on day 7.
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