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20 protocols using db 1701

1

Gas Chromatography Lignin Monomer Analysis

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Samples were quantified using gas chromatography (Model 7890 A, Agilent). A 1 μL injection volume was used through a 30 m × 250 μm × 0.25 μm column (DB-1701, Agilent) with a split ratio of 10:1. An inlet temperature of 280 °C and an oven temperature of 50 °C with a 10 °C min−1 ramp to 280 °C was used with an overall run time of 29 min. An FID was used to quantify the products, with dimethoxybenzene as an external standard. Allyl syringol (Alfa Aesar, 98%) and propyl guaiacol (Sigma-Aldrich, 99%) were used as calibration standards Additionally, methyl paraben was not quantified in the monomer yield (although it was detected in every sample) as it is a pendent group to lignin attached by an ester linkage.
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2

GC-MS Analysis of Bio-oil Composition

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The bio-oil
fractions were analyzed using GC-MS (8890N, Agilent Technologies).
A capillary column (DB-1701, 60 m × 0.25 mm × 0.25 μm)
was used to separate the various compounds in the bio-oil. High-purity
helium (≥99%, AR) was maintained as the carrier gas at a flow
rate of 1 mL/min. The shunt ratio and injection temperature were set
at 60:1 and 280 °C, respectively. The initial temperature of
the column chamber was 40 °C, which was then programmed to 240
°C at a ramp rate of 5 °C/min and maintained for 5 min.
Approximately 1 μL of bio-oil was injected into each trial using
a 7683 series autosampler. The mass spectrometry was performed in
the ionization scan mode with an ionization energy of 70 eV and a
scan range of 12–550 amu. The ion source temperature was 230
°C, and the interface temperature was 250 °C. The information
on the bio-oil components corresponding to the chromatographic peaks
was determined based on the NIST17.L database. The relative content
of the various compounds in bio-oil was determined from the percentage
of the peak area of a single component in the total peak area.
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3

GC-MS Analysis of Fatty Acid Methyl Esters

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The oil samples
were converted to their corresponding fatty acid methyl esters by
KOH-catalyzed transesterification.23 (link),24 (link) This sample
was analyzed using a Bruker 436-GC gas chromatograph (GC) and a SCION-MS
select, single quadrupole mass spectrometer (Bruker Corp., Billerica,
MA, USA). The GC was equipped with a 60 m Agilent DB1701 capillary
column [low/mid polarity (14%-cyanopropyl-phenyl)-methylpolysiloxane]
with a 15 m guard column before the backflush valve. American Oil
Chemists’ Society (AOCS) Animal & Vegetable Reference Set
and customized standards were purchased from AccuStandard (New Haven,
CT) for chemical identification and quantification, respectively.
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4

Nitrogen-Fixing Ability Assay of Bacteria

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Nitrogen-fixing ability of all isolate was tested by using ARA previously described by Hardy et al. (1968 (link)). All bacterial isolate was inoculated in a 25 mL flask containing 10 mL semi solid JNFb medium (Table S1) and bacteria were grown at 30 ± 2°C for 3 days. Five Percent air from the tubes was replaced by acetylene through a syringe, incubated for 12 h, 0.5 mL gas was withdrawn from the tube, and ethylene formation was analyzed through a gas chromatograph (GC-17A, Shimadzu, Kyoto, Japan) with a flame ionization detector and a column filled with DB-1701 (Agilent, Santa Clara, USA).
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5

Pyrolysis GC-MS Analysis of Lignins

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The milled lignins (1.7 mg) were pyrolysed in a EGA/Py-3030D micro-furnace pyrolyzer (Frontier Laboratories Ldt.), connected to an Agilent 7820A GC system equipped with a DB-1701 fused-silica capillary column (60 m × 0.25 mm i.d. × 0.25 μm film thickness), and to a Agilent 5975 Mass detector (EI at 70 eV). The pyrolysis was performed at 500°C (1 min). The oven temperature was programmed from 45°C (4 min) to 280°C at a heating rate of 4°C min−1, and held at 280°C during 10 min. The GC/MS interface was kept at 280°C and the injector at 250°C. The carrier gas was Helium with a flow of 2 mL min−1. The compounds were identified using the literature (Faix et al., 1990 (link); Ralph and Hatfield, 1991 (link)) and the Wiley and NIST libraries. Peak molar areas were calculated for each compound (by dividing the peak area by the respective molecular weights), the summed molar areas were normalized and the data expressed as percentage.
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6

GC-FID Quantitation of Analytes

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For the quantitation of the analytes identified by GC-MS, the experiments were performed using a GC system (Thermo Trace GC Ultra) equipped with a Flame Ionisation Detector (FID). Separation of the compounds was conducted on a column DB-1701 30 m × 0.25 mm (0.25 µm film thickness; Agilent Technologies, Basel, Switzerland), using helium as the carrier gas. The injection volume was 1 µL, and the flow rate 2.5 mL/min. The injector temperature was 200 °C with a split ratio of 1:10 and the FID temperature was 250 °C. The oven temperature was programmed as follows: the column was held initially at 40 °C for 5 min, then increased to 190 °C at 7 °C/min, then increased to 280 °C at 50 °C/min. For the GC-FID quantitation, standards and blanks were prepared. For blank, 7 mL of acetonitrile +70 µL of stock solution of injection standard at 1 g/L, then prepare as described above.
For calibration, three different concentrations of each analyte were prepared by diluting 30, 70 and 140 µL of the standard stock solution (1 g/L) in 7 mL of acetonitrile and 70 µL of stock solution of injection standard (1 g/L), then prepared as described above. The determined calculations showed a calibration range from 0.1 to 92 mg/kg and a coefficient of determination (R2) ≥ 0.999.
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7

Trapping and Analyzing Volatile Compounds

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A 100-µL aliquot from the HPLC fractions was spotted onto filter paper in a 35 mm petri dish in a rectangular plate containing half-strength MS medium. The volatilized compound (atmospheric pressure at 23 °C) was trapped during overnight incubation with 2 discs of monolithic MonoTrap DCC18 (GL Science, Tokyo, Japan), which were placed at a distance of 2 cm from the 35 mm petri dish. The trapped compounds were extracted with methylene chloride, dried with anhydrous Na2SO4, and concentrated to 10 µL. We used 1 µL for the GC–MS analysis via a 6890 A with 5973 network mass selective detector (Agilent Technologies) equipped with a GC column DB1701 (model 122-0732) (Agilent Technologies, Santa Clara, CA, USA) under split mode (split ratio 1:10), with the oven temperature program starting from 10 min holding at 40 °C, followed by a gradient temperature increase to 220 °C in 30 min at a rate of 5 °C/min. The identity of the compounds was evaluated from retention time and fragmentation patterns using the Wiley 275 library. A GC column Cyclodex-B (model 112-2532) (Agilent Technologies) was used for the chiral GC–MS analysis.
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8

GC-FID Analysis of Organic Analytes

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All the reagents and solvents employed were commercially available and were used as received without further purification. All the analytes were of analytical grade and dissolved in dichloromethane. Untreated fused-silica capillary tubing (0.25 mm, i.d.) was purchased from Yongnian Ruifeng Chromatogram Apparatus Co., Ltd. (Hebei, China). The commercial capillary column DB-1701 (30 m × 0.25 mm, i.d., 0.25 μm film thickness, 14% cyanopropylphenyl 86% dimethyl polysiloxane) was purchased from Agilent Technologies.
An Agilent 7890A gas chromatograph equipped with a split/splitless injector, a flame ionization detector (FID) and an autosampler was used for GC separations. All the separations were performed under the following GC conditions: nitrogen of high purity (99.999%) as carrier gas, injection port at 250 °C, split ratio at 60 : 1, FID detector at 250 °C. Oven temperature programs for the GC separations were individually provided in their figure captions. 1H NMR spectra were recorded on a Bruker Biospin 400 MHz instrument using TMS as the internal standard. IR spectra were recorded on a Bruker Platinum ART Tensor II FT-IR spectrometer.
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9

Quantification of Organophosphate Pesticides

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OPPs in the samples were quantified by an Agilent 7890 Gas Chromatography (Agilent Technologies, Inc, Santa Clara, CA, USA) with a capillary column (DB-1701, 30 m × 0.25 mm × 0.25 mm) and a flame photometric detector. Flow rate of the carrier gas (nitrogen gas) was 3 mL/min. The temperatures of injection, column and detector were set at 200, 90 and 250 °C, respectively. The purified sample (1.0 μL) was detected under programmed temperature gradient from initial temperature of 90 °C for 1 min, heating from 100 to 260 °C at 10 °C/min, holding for 3 min at 260 °C. Quantification of the pesticides was carried out by comparison of their peak areas with a calibrated standard curve with multitude-point calibration.
The relative decreasing levels of OPPs was calculated as the decreased concentrations of OPPs at the last week compared with the beginning ones.
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10

Dimethoate Degradation in Buffer

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The degradation of dimethoate was performed in buffer solution. A volume of 50 mL buffer was spiked with dimethoate of different concentrate and ALP. The reaction mixture was stirred at 37 °C for 1, 2, 3, 4 h, respectively. Pesticides were extracted by a liquid extraction method. The conditions and procedures were the same as those previously reported.23 Finally, 1 mL of the extract (7.5 U mg−1) was transferred into sample bottle for GC analysis by Gas Chromatography (Agilent 7890, Agilent Technologies, Inc, Santa Clara, USA) with 30 m × 0.250 mm × 0.25 μm capillary column DB-1701.
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