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3 protocols using ab84870

1

Immunostaining of Expanded Samples

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Punches were blocked in IF buffer (1% BSA and 0.05% Tween‐20 in PBS) for 1–2 h at RT, followed by the incubation with primary antibody diluted in IF buffer, for 24 h at 4°C. Punches were washed in 1× PBS for 1–2 h and incubated for 24 h at 4°C with secondary antibody and DAPI (ThermoFisher; D1306) diluted 1:10 000 in IF buffer. The following primary antibodies were used for immunostaining of expanded samples: mouse anti‐acetylated tubulin (Sigma, T7451) at 1:4000, mouse anti‐alpha tubulin (Sigma; T6074) at 1:500, rabbit antibeta tubulin (Abcam; ab15568) at 1:250, rabbit anti‐ARL13B (Abcam; ab83879) at 1:150, rabbit anti‐Cep164 (Proteintech; 22227‐1‐AP) at 1:500, rabbit anti‐ANKRD26 (GeneTex; GTX128255) at 1:200, rabbit anti‐FBF1 (sigma; HPA023677) at 1:100, rabbit anti‐RPGRIP1L (Proteintech; 55160‐1‐AP) at 1:150, rabbit anti‐IFT88 (Proteintech; 13967‐1‐AP) at 1:150, mouse anti‐Rootletin (Santa Cruz; sc‐374056) at 1:50, rabbit antipericentrin (Abcam; ab4448) at 1:400, rabbit anti‐Cep290 (Abcam; ab84870) at 1:150 and rabbit antipolyglutamylated tubulin (AdipoGen; AG‐25B‐0030) at 1:800. Secondary antibodies antimouse Alexa Fluor 488 (Invitrogen; A11029), antirabbit Alexa Fluor 488 (Invitrogen; A11034), antimouse Alexa Fluor 555 (Invitrogen; A28180), antirabbit Alexa Fluor 555 (Invitrogen; A21429) were used at a 1:800 dilution to label primary antibodies.
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2

Ciliary Protein Expression Analysis

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HEK293 cells and 2 dpf zebrafish embryos were homogenized in RIPA buffer (Cell Signaling Technology, 9806) containing Protease Inhibitor Cocktail (Roche, 04693159001) followed by short sonication. Sample supernatants were collected after centrifugation at 18,400 g for 20 min. Protein (30 μg) was separated on a NuPAGE™ Mini Protein Gel (Invitrogen, NP0322BOX) before being transferred to PVDF membrane (Millipore, IPVH00010). Membranes were blocked in TBS containing 5% non-fat milk powder (Lab Scientific) for 1 h. Immunoblotting was performed at 4°C overnight using antibodies against TMEM67 (1:1000; 13975-1-AP), TCTN1 (1:1000; 15004-1-AP), B9D2 (1:1000; 22508-1-AP) and MKS5/RPGRIP1L (1:1000; 29778-1-AP) from Proteintech; NPHP1 (1:1000; GTX65891) from GeneTex; IFT172 (1:1000; bs-15560R) from Thermo Fisher Scientific; NPHP4 (1:1000; H00261734-M01A) from Abnova; CEP290 (1:1000; ab84870) from Abcam; and GAPDH (1:2000; 2118) from Cell Signaling Technology. Antibody against Ift88 (1:3000) was generously gifted by Dr Brian Perkins (Cole Eye Institute, Cleveland Clinic, Cleveland, OH, USA). The membranes were incubated with a secondary antibody at room temperature for 1 h after washing with TBS containing 0.5% Tween 20. Protein bands were visualized using Pierce Clarity Western ECL substrate (Bio-Rad, 170-5061).
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3

Antibodies for Ciliogenesis and Signaling

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The following primary antibodies were used: acetylated α-tubulin (T7451, diluted 1:2000 for immunofluorescence, Sigma), γ-tubulin (T6557, Sigma), FLAG (F1804, Sigma), HA (H3663, Sigma), CEP83 (HPA038161, Sigma), CEP164 (SAB3500022, Sigma), CEP290 (ab84870, Abcam), TALPID3 (24421-1-AP, Proteintech), ARL13b (17711-1-AP, Proteintech), FBF1 (11531-1-AP, Proteintech), TCTN1 (15004-1-AP, Proteintech), SCLT1 (14875-1-AP, Proteintech), IFT140 (17460-1-AP, Proteintech), β-actin (sc-47778, diluted 1:5000 for western blotting, Santa Cruz), SMO (sc-166685, Santa Cruz), CEP89 (ab204410, Abcam), ANKRD26 (GTX128255, GeneTex), polyglutamylated tubulin (ALX-804-885-C100, diluted 1:2000 for immunofluorescence, Enzo Life Sciences), GLI-3 (AF3690, R&D Systems), ODF2 (H00004957-M01, Abnova), and Polycystin-2 (Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center). The secondary antibodies were goat anti-mouse Alexa Fluor 488/594 or goat anti-rabbit Alexa Fluor 488/594 (1:1000 dilution). Primary antibodies were diluted 1:500 for immunofluorescence and 1:2000 for western blotting experiments unless otherwise specified. Uncropped versions of blots can be found in Supplementary Fig. 9.
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