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99 protocols using edu kit

1

Evaluating ADSC-Exosome Effects on Cell Proliferation and Migration

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Fibroblasts, HUVECs, and HaCaT cells were treated with phosphate-buffered saline (PBS) or ADSC-EXOs (20 µg/mL) for 48 h; cell proliferation was evaluated by EdU kits (Beyotime Biotechnology). The migration abilities of fibroblasts, HUVECs, and HaCaT cells were assayed using 24-well Transwell Chambers (Corning Inc., Corning, NY, USA). In brief, cells suspended in Dulbecco’s modified Eagle medium without serum were added to the upper chamber and treated with PBS or ADSC-EXOs (5 µg/mL and 10 µg/mL). The lower chamber was filled with 600 µL of complete culture media consisting of 10% fetal bovine serum. After incubation at 37 °C for 24 h, cells that had migrated to the bottom surface were stained with crystal violet (Solarbio, Beijing, China). For the tube formation assay, HUVECs were seeded in 48-well plates that had been precoated with Matrigel Basement Membrane Matrix (BD Biosciences, NJ, USA). After incubation with PBS and ADSC-EXOs (10 µg/mL or 20 µg/mL) for 2 h, 4 h, and 8 h, tube formation was imaged by microscopy. The total number of loops, nodes, and branch points was calculated and used to quantify the tubular networks.
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2

Evaluating Proton Pump Inhibitor Effects on MC3T3-E1 Cell Proliferation

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We chose a dose range of 1–50 µM because in extracellular fluid, the effective concentration of PPIs was relatively low (1–50 µM), which was almost equivalent to the clinical blood concentration of 20–40 mg/dl (Olbe et al. 2003 (link)). Pharmacokinetic analysis of clinical proton pump inhibitors showed that the maximum blood concentration of lansoprazole was in the range of 1–15 µM. CCK-8 (Beyotime, C0038) and EdU kits (Beyotime, C0078S) were used to study the effects of PPIs on the proliferation of MC3T3-E1 cells. MC3T3-E1 cells were seeded in 96-well plates (density: 8000 cells/well) until the cells reached ~ 70–80% confluence, after which the cells were treated with LPZ. MC3T3-E1 cells were incubated for 24 h in α-MEM/10% FBS containing different concentrations of LPZ (0, 5, 10, 20, 50 μM), and cells in the vehicle group were cultured in α-MEM/10% FBS containing 0.1% DMSO (v/v) (Sigma, D2650). Then, the cultures were washed with PBS, the medium in each well was replaced with 100 µl of FBS-free α-MEM, and 10% CCK-8 working solution was added. The mixture was incubated for 1 h at 37 °C in a humidified atmosphere of 5% CO2 and measured at 450 nm using a microplate reader. The cells in the control group were cultured in α-MEM containing 0.1% DMSO.
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3

Cell Viability and Proliferation Assays

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Cell viability and proliferation were assessed through CCK-8 and Edu assays. Using a CCK-8 kit (Dojindo, Tokyo, Japan), a cell suspension of 2 × 10 3 cells was incubated with CCK-8 solution for 2 hours, after which absorbance at 450 nm was measured to evaluate cell viability. Concurrently, an EdU assay was conducted using an EdU kit (Beyotime, Shanghai, China). A separate batch of cells (5 × 10 3 cells) was stained with EdU reagent for 2 hours, followed by a 15-minute DAPI treatment to re-stain the nuclei. Following staining, the cells were examined under a fluorescence microscope (Olympus, Tokyo, Japan) to detect the presence of Edu-positive cells, which serve as cell proliferation markers. Together, these two assays comprehensively assessed the cell proliferation capacity.
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Quantifying VSMC Proliferation Using EdU

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5-Ethynyl-2′-deoxyuridine (EdU) assay was performed with an EdU Kit (C0078S, Beyotime) according to manufacturer’s instructions. Briefly, VSMCs with different treatments were seeded onto 12-well plates and cultured in SMCM medium for 48 h. Then switched into fresh SMCM medium supplemented with EdU (10 μmol/L) and incubated for 2 h. Cells were fixed with 4% paraformaldehyde for 15 min and permeated with 0.3% Triton X-100 (T8200, Solarbio) for another 15 min. Click reaction solution configured according to the instructions was added to each well. After 1 h of incubation in the dark, nuclei were stained with DAPI (C0060, Solarbio) for 10 min. Images were acquired with Invitrogen Evos FL Auto2 microscope (Invitrogen, USA). The proportion of EdU-positive cells was by measured using NIH ImageJ software (version 1.52a).
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5

Cell Proliferation Assays Protocol

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Cell proliferation assays, including Cell Counting Kit-8 assay and colony formation assay, were performed as described previously [21 (link)]. The cell proliferation ability was measured by the 5-ethynyl-2ʹ-deoxyuridine assay using an EdU kit (Beyotime, Shanghai, China).
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Cell Proliferation Evaluation with EdU

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Cell proliferation was evaluated using the EdU kit (Beyotime) according to the manufacturer’s instructions. Briefly, 1×105 cells were seeded in 12-well plates. Cells were treated with EdU reagent (10 μM) and incubated for 2 h at 37°C. The EdU+ cells were observed under a fluorescence microscope (Nikon, Japan) and evaluated using ImageJ software.
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7

Cell Proliferation Assay with EdU

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For EdU staining, cells were seeded in 6-well plates and the EdU Kit (Beyotime, China) was used. Cells were incubated with amentoflavone for 48 h, and an EdU working solution was added to the plate. After 2 h, cells were treated with Click-iT Edu reagents. The EdU-positive cells were observed under a microscope.
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8

Cell Proliferation Assays for Tumor Cells

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A Cell Counting Kit-8 (CCK8) assay kit from Dojindo Laboratories (Japan) was used to evaluate tumor cell proliferation. Briefly, we added 3000 cells/well of a 96-well plate, and after 0, 24, 48, or 72 h of culture we added CCK8 reagent to appropriate wells and incubated plates for an additional 2 h at 37°C. We then utilized a microplate reader (Bio-Rad, CA, USA) to quantify absorbance (OD) at 450 nm for each well, and plotted the resultant values to generate proliferation curves. In addition, EdU incorporation staining assays were conducted with an EdU Kit (Beyotime, Shanghai, China) based upon provided directions. ImageJ (NIH, USA) was used for all analyses of the resultant images.
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9

Measuring Cell Growth and Apoptosis

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The EdU kit (Beyotime, shanghai, China) and cell apoptosis kit (share-bio, shanghai, China) were applied to measure cell growth as previously described [32 (link)].
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10

Evaluating Cell Proliferation by EdU Assay

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After being transfected with siRAB42 for 48 h, SMMC7721 and Hep3B cells were seeded into 96-well plates at a density of 2 × 104 cells per well. After an additional 24 h of incubation, SMMC7721 and Hep3B were to undergo EdU incorporation assays using an EdU kit (Beyotime, China) based on the manufacturer’s instructions. The samples were visualized with a Zeiss Axio Observer microscope, and images were captured in at least three random fields for further analysis.
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