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59 protocols using tnf α

1

Matrigel Invasion Assay with TNF-α

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matrigel invasion assay was performed according to the science advisory board website (www.scienceboard. net/resources/protocols). In detail, the matrigel (BD Bioscience, UK) was thawed on ice overnight and diluted to 1 mg/ml in cold serum-free Ham-F12 (Gibco, USA). A 100 μl of matrigel was applied into chamber of 24-well transwell (Corning Incoporated, USA) and incubated at 37°C for 4-5 h for gelling. Next, 100 µl of 1x 106 cells/ml KKU-100 was seeded into the transwell and subsequently TNF-α (Prospec, USA) was added at a final concentration of 0.1, 1, 10, and 100 ng/ml. The lower chamber of the transwell was filled with 650 μl of Ham-F12 (Gibco, USA) containing 1% FBS and 1X penicillin/streptomycin (Biowest, France) and subsequently incubated at 37°C for 24 h. For detection, cells were fixed with 3.7% formaldehyde in 1X PBS for 2 min and then permeabilized by 100% methanol at room temperature for 20 minutes. The transwell was washed with 1X PBS twice and stained with Giemsa (Sigma, USA) for 15 minutes. After washing with 1X PBS, non-invaded cells on the top of the transwell was removed by a cotton swab and invading cells were counted under a light microscope (Olympus, USA). Time-course analysis was performed by choosing optimal concentration (10 ng/ml) of TNF-α (Prospec, USA) and the number of invading cells were counted at different time points; 0, 6, 12, 24 and 48 h.
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2

ANG Modulation of TNF-α Induced Response

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HCFs were cultured in six-well plates for three days. They were washed twice with PBS. The medium of confluent corneal fibroblast cells was changed to serum-free MEM for one day before treatment. The cells were treated with TNF-α purchased from PROSPEC (20 ng/mL) for eight hours, and with or without ANG (2 μg/mL) at the last 30 minutes of incubation with TNF-α. ANG was obtained from the Department of Biochemistry at Chungbuk National University and the identity of the purified ANG has been confirmed by western blotting with ANG specific antibodies by methods described in a previous report [31 (link)]. The biological activity of the purified ANG has also been confirmed by its nuclear translocation in HUVE cells by procedure described in detail [31 (link)]. The purification and endotoxin levels of recombinant ANG expressed in E. coli are shown in Supplementary Figures  1 and 2 (see the Supplememtery Material available online at http://dx.doi.org/10.1155/2014/861435). The cells were then collected for total RNA isolation and protein extraction.
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3

Cytokine-Induced Apoptosis in Beta Cells

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Penicillin and streptomycin (Pen/Strep), Hanks' solution, DMEM, CMRL 1066 medium and trypsin-EDTA were obtained from Biological Industries (Bait Haemek, Israel) . FBS was from Hyclone Laboratories (Logan, UT, USA). Protein-G Agarose beads and antiactin antibodies were from Santa Cruz Biotechnology. Insulin, collagenase (type XI), protease inhibitor cocktail and 5,6-chloromethyl-2′,7′-dichlorodihydrofluorescein diacetate, acetyl ester (CM-H 2 DCFDA) were from Sigma Chemicals. Enzolyte-caspase RH110 Caspase3/7 Assay kit was from AnaSpec Ltd (San Jose, CA, USA). zVADfmk was from MegaPharm Ltd (Raanana, Israel). Mouse insulin ELISA kit was from Mercodia (Uppsala, Sweden). CellTiter-Blue assay kit was from Promega (purchased through Biological Industries, Beit HaEmek, Israel). Monoclonal p-Tyr (PY-20) antibodies were from BD Biosciences (San Jose, CA, USA). Anti MCL-1 antibodies (Ab 32087) were purchased from Abcom (London, UK). Cytokines IL-1β and IFN-γ were purchased from MD Biosciences (Ness Ziona, Israel). TNF-α was provided by Prospec-Tany Technogene (Rehovot, Israel) . Cytokine mixture (1x-cytomix) consisted of 3 nM TNF-α, 3 nM IFN-γ and 1.5 nM IL-1β (biological activity: 10 U/ng (TNF-α, IFN-γ) and 200 U/ng (IL-1β)). Human insulin ELISA kits was purchased from Mercodia (Uppsala, Sweden).
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4

Macrophage and Fibroblast Response to Saliva Secretome

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Primary macrophages and RAW264.7 cells were exposed to the secretome and stimulated with 5% saliva or 100 ng/mL LPS for 24 h. Gingival fibroblasts were exposed to the secretome corresponding to 1 × 107 cells/mL in the presence of IL-1β and TNFα (both at 10 ng/mL, ProSpec-Tany TechnoGene Ltd., Rehovot, Israel) in growth medium. After 24 h, gene expression analysis was performed and the supernatant was collected for immunoassays.
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5

Proinflammatory Cytokine Signaling Assay

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TNFα (Cat# cyt-252) and IL1β (Cat# cyt-273) were purchased from ProSpec (Rehovot, Israel). PD98059 and SB203580 were from Cell Signaling Technology (Danvers, MA, USA). All other reagents were obtained from Sigma-Aldrich (St. Louis, MO, USA), unless otherwise specified.
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6

Mesenchymal Stem Cell Isolation and Characterization

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Once obtained, BM, WJ, FSK, and AT were processed according to our previous protocols [15 (link),16 (link)]. Cell cultures were incubated at 37°C in a 5% CO2 humidified atmosphere. After 48 hours, non-adherent cells were removed by washing, and the medium was changed twice a week. When sub-confluency (80–90%) was achieved, adherent cells were harvested by TrypLE Select (Lonza) and replated at a lower density (1,000 cells/cm2). MSCs of different origins were characterized for their morphology, phenotype and multi-lineage potential according to our previous work [17 (link)]. MSCs were cultivated under basic or inflammatory conditions. As previously described [18 (link)], inflammation priming was performed upon treating MSCs, for overnight, with a cocktail of pro-inflammatory cytokines, specifically IL-1β (Peprotech, Rocky Hill, NJ, USA) (25 ng/mL), TNF-α (50 ng/mL), IFN-α (10 ng/mL), and IFN-γ (50 ng/mL) (all from Prospec Inc., Rehovot, Israel).
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7

Cytokine and Glucolipotoxic Stress on Human Islets

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Pancreatic human islets were obtained through the Integrated Islet Distribution Program (ESM Table 1). Human islets recovered after arrival in Connaught Medical Research Laboratories (CMRL) medium for 2 h, then were handpicked using a green gelatin filter to eliminate residual non-islet material. Human islets were treated with either a cytokine mixture (10 ng/ml TNF-α, 100 ng/ml IFN-γ and 5 ng/ml IL-1 β; all purchased from ProSpec, East Brunswick, NJ, USA) for 72 h, or glucolipotoxic (GLT) mixture (16.7–25 mmol/l glucose plus 0.5 mmol/l palmitate; Sigma, St Louis, MO, USA) for 48 h, in glucose-free RPMI 1640 (Gibco, Carlsbad, CA, USA) medium supplemented with 10% (vol./vol.) FBS (HyClone, South Logan, UT, USA) and 1% (vol./vol.) penicillin/streptomycin (Gibco) for times indicated in the legends, prior to lysis for immunoblot analysis. mRNA was quantified from islets by quantified real-time PCR as described [16 (link)].
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8

Effects of Emdogain on Oral Epithelial Cell Inflammation

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The oral squamous cell carcinoma cell line HSC2, originally obtained from the Health Science Research Resources Bank (Sennan, Japan) and cultivated in growth Dulbecco’s modified Eagle’s medium (DMEM, Sigma-Aldrich, St. Louis, MO, USA), 10% fetal calf serum (Bio&Sell GmbH, Nuremberg, Germany), and 1% antibiotic-antimycotic (Sigma Aldrich, St.Louis, MO, USA). HSC2 cells were seeded at a concentration of 2.5 × 105 cells/cm2 onto culture dishes one day prior to stimulation. Primary oral epithelial cells were taken from the epithelial layer of human gingiva harvested from the extracted third molars of patients who had given informed and written consent. The Ethics Committee of the Medical University of Vienna (EK NR 631/2007) approved the protocol. Primary cells were cultivated in a keratinocyte growth medium (PromoCell, Heidelberg, Germany) and seeded at a concentration of 4.0 × 105 cells/cm2 onto culture dishes one day prior to stimulation. In the basic setting, HSC2 and primary epithelial cells were treated overnight with 10 ng/mL TNFα and 10 ng/mL IL-1β (both ProSpec, Ness-Ziona, Israel) with and without 300 µg/mL Emdogain® (EMD; Straumann Group, Basel, Switzerland) or with serum-free medium alone at 37 °C, 5% CO2, and 95% humidity before analysis.
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9

Molecular Biology Reagents Protocol

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Molecular biology-grade reagents were purchased commercially. Poly-L lysine, protease inhibitor cocktail, H2DCFDA, DAPI, Flouramaount, SMCC (Succinimidyl- trans-4-(N-maleimidylmethyl)cyclohexane-1-carboxylate), HIV-TAT1, Iodocetamide, DMF, Cyclodextrin, Cycloheximide (CHX), Etoposide, Methyl β-Cyclodextrin (MβCD), anti-His (SAB4301134), trypan blue, and a BCA protein estimation kit were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ni+2-NTA beads, LipofectamineLTX plus transfection reagent Prestoblue viability assay kit, IL-1 beta Human ELISA Kit (BMS224HS), and Alexa fluors were purchased from Invitrogen (Life Technologies, Carlsbad, California, USA). A dual glow luciferase assay kit was purchased from Promega (Madison, WI, USA). The death receptor ligands CD 95L and TNF-α were obtained from ProSpec (Rehovot, Israel). HA14-1 was obtained from Maybridge (Cornwall, UK). The details of the antibodies used in this study are provided in Supplementary Material Table S1. All other chemicals used were of analytical grade and purchased from Merck (Darmstadt, Germany).
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10

Investigating Signaling Pathways in Cell

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Recombinant human CXCL5 and TNF-α were purchased from Prospecbio (Ness-Ziona, Israel). Specific Akt, ERK1/2, p38, and c-Jun pathway inhibitors (A6730, U0126, SB203580, and SP 600125, respectively) were purchased from Sigma/Aldrich Chemical Co. (St. Louis, MO, USA). Antibodies to MMP2, MMP9, MMP13, p-Akt, Akt, p-ERK1/2, ERK1/2, p-p38, p38, p-c-Jun, and c-Jun was purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-rabbit or anti-mouse HRP-conjugated secondary antibodies were bought from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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