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3 protocols using ube2s

1

Cell Culture and Antibody Usage

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The human U2OS cell line was grown in McCoy's 5A with L-glutamine medium (Cellgro, Corning) supplemented with 10% FBS (GenDEPOT) and 1% penicillin/streptomycin (Gibco). The 293T cell line was grown in DMEM (Cellgro, Corning) with 4.5 g/L glucose, L-glutamine, and sodium pyruvate medium supplemented with 10% FBS and 1% penicillin/streptomycin. Antibodies used are: Cezanne (Santa Cruz, sc-514402), RAP80 (Bethyl Laboratories, A300-763A), Abraxas (homemade), HA (Cell Signaling Technology, 3724s, 2367s), GFP (Invitrogen, A11122, A11120), K63 (EMD Millipore, 05-1308), ubiquitin (Santa Cruz, sc-8017), Ubc13 (Zymed, 37-1100), Ube2S (Cell Signaling Technology, 11878s), Lamin A (Sigma, L1293), GAPDH (Invitrogen, MA5-15738), BRCA1 (Santa Cruz, sc-6954), 53BP1 (Upstate, 05-726), γH2AX (Upstate, 05-636 JBW103), Rad18 (Abcam, ab188235), and pRPA32 (Bethyl, A300-245).
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2

Protein Expression Analysis of MCF10A

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MCF10A protein was extracted using M-PER containing an EDTA-free Halt Protease Inhibitor Cocktail (Thermo Fisher Scientific, Massachusetts, USA), while proteins from all other cell lines were extracted using RIPA lysis buffer. Protein transfer was performed on a nitrocellulose membrane (Bio-Rad Laboratories, California, USA). Primary antibodies include: UBE2S (11878; Cell Signaling Technology, Massachusetts, USA; 1:1,000), UBE2C (14234; Cell Signaling Technology; 1:1,000), Numb (sc-136554; Santa Cruz Biotechnology, Texas, USA; 1:200), and ACTIN (3700; Cell Signaling Technology; 1:1,000). Protein was visualized with the ECL Western Blotting Detection System (PerkinElmer, USA), and a densitometry value was determined in terms of pixel intensity by ImageJ.
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3

Antibodies Used in DNA Damage Response Study

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Antibodies used in this study are BRCA1 (Santa Cruz), γ-tubulin (Sigma); HA (Cell Signaling), γH2AX (Upstate), Ube2S (Cell Signaling, Abcam), Ube2C (Sigma), Flag (Sigma), H2A (Abcam), H2AX (Abcam), H3 (Abcam), phospho H3 (Upstate), 53BP1 (Upstate), ubH2A (Abcam), GFP (Invitrogen), FK2 (Biomol), Cyclin B1 (SantaCruz), ATM (Cell Signaling), ATR (SantaCruz sc-1887), Ubc13 (Zymed Laboratories), Rap80 (Bethyl A300-763A), Rpb1 (SantaCruz sc-899), PCNA (Santa Cruz), OTUD7B (Santa Cruz sc-514402). The rabbit anti-Abraxas antibodies was generated as previously described (Wang et al., 2007 (link)).
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