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20 protocols using erythrosin b

1

Extraction and Analysis of Natural Dyes

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Indigo and alizarin (97%) were purchased from ACROS Organics; indirubin (≥98%), 9-aminoacridine (9-AA, ≥99.5%), erythrosin B (≥95%), 2-iodobenzoic acid (≥99%) and Universal MALDI matrix [1:1 mixture of 2,5-dihydroxybenzoic acid (DHB) and α-cyano-4-hydroxy-cinnamic acid (α-CCA)] were obtained from Sigma-Aldrich, carminic acid (≥96%) from Fluka Analytical, lucidin from Cfm Oskar Tropitzsch GmbH (Marktredwitz), tetrahydrofuran (HPLC grade) from Roth, formic acid (99–100%), trifluoroacetic acid, ethanol, methanol and acetonitrile (all solvents HPLC gradient grade) from VWR, and TLC (thin-layer chromatography) plates (ALUGRAM Sil G) were purchased from Macherey-Nagel. Purpurin has been obtained from Aldrich’s collection of rare chemicals and rubiadin has been synthesized according to procedures of Takano et al.33 (link). Double distilled water was produced in a distillation apparatus bought from Gebr. Rettberg GmbH. An extended tabby weave with blue warps (wool fibers previously vat dyed using natural indigo) and red wefts (wool fibers previously mordant dyed using alum and cochineal) was handcrafted by a textile archaeologist. Recent animal- and plant-derived fibers dyed with synthetic indigo or E120, a food dye extract from scale insects (Dactylopius coccus Costa), were used for first tests (dyeing processes were performed as previously reported28 (link),34 (link)).
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2

Immune Cell Receptor Activation Assay

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The following were purchased: PIPES, BSA, EDTA, D-glucose, erythrosin B (Sigma-Aldrich, St. Louis, MO, USA); anti-mouse IgG1-Alexa Fluor 647, human IgG (Cappel Laboratories, Malvern, Pa); anti-FceRI, 15A5, and 22E7 (gift from Hoffman-LaRoche); human IgG (Cappel Laboratories); recombinant C5a (#4995B, BioVision, Milpitas, CA); FMLP (formyl-met-leu-phe, Sigma, St. Louis, MO).
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3

Sago Starch and Hide Powder Characterization

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Sago starch was purchased from a local departmental store in Chennai and ground into fine powder using a mixer. Hide powder was prepared from the cowhide trimming wastes collected from a local tannery at Chennai. Acetone, methanol, sodium carbonate and ethylene glycol were procured from Thermo Fisher Scientific and used as received without further purification. Sodium periodate, titanium butoxide, Erythrosin-B and Bouin’s solution were purchased from Sigma-Aldrich. Isopropanol, nitric acid and diethyl ether were procured from SD Fine Chemicals. Albendazole oral suspension IP and silver nitrate gel were acquired from a local pharmacy, Chennai.
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4

Comprehensive Molecular Profiling of Cell Death

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3-Bromopyruvate (3BP), ATP Bioluminescent Assay Kit, 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT), 2′,7′-dichlorodihydrofluorescein diacetate (H2DCFDA), MitoTEMPO, antimycin A, menadione, perifosine, digitonin, staurosporine, erythrosin B, LC3 rabbit polyclonal antibody, and actin mouse monoclonal antibody were from Sigma Aldrich. Cyt c mouse monoclonal, COX-IV mouse monoclonal, p53 mouse monoclonal, goat anti-mouse HRP-conjugated IgG, goat anti-rabbit HRP-conjugated IgG, and rabbit anti-goat HRP-conjugated IgG antibodies were from Santa Cruz Biotechnology. Akt rabbit polyclonal, p-Akt (Ser-473) rabbit monoclonal, JNK rabbit monoclonal, p-JNK (Thr183/Tyr185) rabbit monoclonal, p44/42 MAPK (ERK1/2) rabbit monoclonal, p-ERK1/2 (Thr202/Tyr204) rabbit monoclonal, p38 MAPK rabbit polyclonal, p-p38 (Thr180/Tyr182) rabbit monoclonal, p-p53 (Ser-15) rabbit polyclonal, caspase-3 rabbit polyclonal, and caspase-9 rabbit polyclonal antibodies were from Cell Signaling Technology. Beta tubulin mouse monoclonal antibody was from Proteintech. 5,5′,6,6′-tetrachloro-1,1′,3,3′tetraethylbenzimidazolylcarbocyanine iodide (JC-1) and MitoSOX™ were from Molecular Probes.
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5

Isolation of Amniotic Membrane Cells

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Fetal membranes were washed with ice-cold phosphate-buffered saline (PBS, Corning, NY, USA) with 1% penicillin-streptomycin solution (10,000 U/mL penicillin, 10,000 U/mL streptomycin, Corning, Steuben County, NY, USA). Amniotic membrane was mechanically peeled off the underlying chorion layer; to remove any blood clots, tissues were incubated for 10 min at room temperature with PBS/ ethylene diaminetetraacetic acid (EDTA) 0.5 mM. The amniotic membrane was then minced into small pieces (4 cm2 approximately) and digested twice for 30 min at 37 °C using Trypsin-EDTA 0.25% (Corning, Steuben County, NY, USA) with gentle shaking. For both digestion steps, Trypsin was inactivated with fetal bovine serum (FBS, Gibco, Life Technologies, Carlsbad, CA, USA), and the cell suspension was centrifuged for 10 min at 390 g. The cell pellet was resuspended in basal culture medium, Dulbecco’s Modified Eagle’s Medium-high glucose (DMEM H., Corning, Steuben County, NY, USA) containing 10% FBS, 1% penicillin-streptomycin solution, and EGF, 10 ng/mL (Sigma-Aldrich, St. Louis, MO, USA). Single cell suspension was counted and tested for viability using Erythrosin B (Sigma-Aldrich, St. Louis, MO, USA). Only samples with > 90% viability were used for further assays.
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6

Isolation of Amniotic Membrane Cells

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Fetal membranes were washed with ice-cold phosphate-buffered saline (PBS, Corning, NY, USA) with 1% penicillinstreptomycin solution (10,000 U/mL penicillin, 10,000 U/mL streptomycin, Corning, Steuben County, NY, USA). The amniotic membrane was mechanically peeled off the underlying chorion layer to remove any blood clots. Then the tissues were incubated for 10 min at room temperature with PBS/ethylenediaminetetraacetic acid (EDTA) 0.5 mM. The amniotic membrane was then minced into small pieces (4 cm2 approximately) and digested twice for 30 min at 37 °C using trypsin-EDTA 0.25% (Corning, Steuben County, NY, USA) with gentle shaking. For both digestion steps, trypsin was inactivated with fetal bovine serum (FBS, Gibco, Life Technologies, Carlsbad, CA, USA) and the cell suspension was centrifuged for 10 min at 390× g. The cell pellet was resuspended in basal culture medium, Dulbecco’s Modified Eagle’s Medium–high glucose (DMEM H., Corning, Steuben County, NY, USA) containing 10% FBS, 1% penicillin-streptomycin solution, and 10 ng/mL of epithelial growth factor (EGF, Sigma-Aldrich, St. Louis, MO, USA). The single-cell suspension was counted and tested for viability using erythrosin B (Sigma-Aldrich, St. Louis, MO, USA). Only samples with >90% viability were used for further assays.
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7

Photochemical Labeling with Isotopically-Enriched Tryptophan

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13C-15N-labeled Trp was purchased from Sigma-Aldrich (574597). The photo-CIDNP sensitizers fluorescein (FL, 46955), eosin Y (230251) and erythrosin B (200964) were purchased from Sigma-Aldrich. The heavy-atom-containing additives potassium iodide (60399), 3-iodo-1-propanol (451061), 3-bromo-1-propanol (167188), 3-chloro-1-propanol (292087) and ethyl iodide (17780) were purchased from Sigma-Aldrich.
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8

Synthesis and Characterization of Platinum-7-Azaindole Complexes

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K2[PtCl4], 3-chloro-7-azaindole (3Claza), 3-iodo-7-azaindole (3Iaza), 5-bromo-7-azaindole (5Braza) and solvents (acetone, methanol, ethanol, diethyl ether, N,N′-dimethylformamide, water) were purchased from the following commercial sources - Sigma–Sigma-Aldrich Co. (Praha, Czech Republic), Acros Organics Co. (Pardubice, Czech Republic) and Fisher-Scientific Co. (Pardubice, Czech Republic). The complexes cis-[PtCl2(3Claza)2] (1), cis-[PtCl2(3Iaza)2] (2) and cis-[PtCl2(5Braza)2] (3) (Figure 1) were synthesized by the reactions of water solution of K2[PtCl4] with two molar equivalents of naza dissolved in ethanol, and characterized as reported previously [23] (link).
The RPMI 1640 medium and penicillin-streptomycin mixture were purchased from Lonza (Verviers, Belgium). Phosphate-buffered saline (PBS), fetal bovine serum (FBS), phorbol myristate acetate (PMA), Auranofin (98%≤), erythrosin B, and Escherichia coli 0111:B4 lipopolysaccharide (LPS) were purchased from Sigma-Aldrich (Steinheim, Germany). Cell Proliferation Reagent WST-1 was obtained from Roche (Mannheim, Germany). Instant ELISA Kits (eBioscience, Vienna, Austria) were used to evaluate the production of TNFα and IL-1β.
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9

Erythrosin B Procurement from Sigma-Aldrich

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Erythrosin B was procured from Sigma-Aldrich.
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10

Cell Culture Protocols for Adherent and Suspension Cells

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Adherent cells were cultured in the Dulbecco’s modified Eagle medium—DMEM (Gibco, EU) supplemented with 10 % heat-inactivated fetal bovine serum (FBS, Gibco, EU), 2 mM glutamine, and 100 U/0.1 mg penicillin/streptomycin. Cells on suspension were cultured in RPMI 1640 (Gibco, EU) medium supplemented with 10 % FBS (Gibco, EU), 2 mM glutamine, 1 mM sodium pyruvate, 10 mM HEPES. Cells were grown in humidified atmosphere under the conditions of 37 °C/5% of CO2 gas in the CO2 incubator (IGO 150 CELLlifeTM, JOUAN, Thermo Fisher Scientific, Waltham, MA, USA). A erythrosin B (Sigma-Aldrich, St. Louis, MO, USA) dye exclusion method was used to assess cell viability before plating.
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