The largest database of trusted experimental protocols

Af4005

Manufactured by Affinity Biosciences
Sourced in United States

The AF4005 is a laboratory instrument used for analytical fractionation of macromolecules and particles. It employs the principles of Asymmetrical Flow Field-Flow Fractionation (AF4) to separate and analyze a wide range of samples, including proteins, polymers, nanoparticles, and more. The core function of the AF4005 is to provide high-resolution separation and characterization of complex samples.

Automatically generated - may contain errors

13 protocols using af4005

1

Comprehensive Protein Analysis of Cellular Responses

Check if the same lab product or an alternative is used in the 5 most similar protocols
After the treatments, the cells were lysed on ice for 20 min with a mixture of 100 μl RIPA buffer (Fdbio science, Hangzhou, China), 1 μl protease inhibitor (Fdbio science) and 1 μl phosphatase inhibitor (Fdbio science) and centrifuged at 14,000 g for 25 min. Protein concentrations were determined using a BCA Total Protein Assay Kit (CWBIO, China). Protein samples (40 μg/lane) were separated on SDS-PAGE gels (8% or 12%, Epizyme, China) and electrotransferred to PVDF membranes. The blots were incubated with the following primary antibodies: anti-NLRP3 (1:500, A12694, ABclonal), anti-GSDMD (1:500, 39754, CST), anti-p20 (1:500, AF4005, Affinity), anti-CHOP (1:500, ab11419, Abcam), anti-GRP78 (1:500, ab21685, Abcam), anti-COL2A (1:500, ab34712, Abcam), anti-Aggrecan (1:500, ab36861, Abcam), anti-MMP3 (1:500, ab52915, Abcam), anti-MMP13 (1:500, ab39012, Abcam), anti-ADAMTS5 (1:1000, ab41037, Abcam), and anti-SREBP1 (1:1000, ab28481, Abcam). The membranes were washed and incubated with the HRP-conjugated secondary antibodies (1:8000, ABclonal, China) for 1 h. The bands were developed with chemiluminescence reagents and imaged by a myECL imager (Syngene G:BOX ChemiXT4, United Kingdom). The experiment was repeated in triplicate, and the blots were quantified by ImageJ software. An antibody against β-actin (AC026, 1:1000; ABclonal) served as an endogenous control.
+ Open protocol
+ Expand
2

Western Blot Analysis of Kidney Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blots were performed as previously described [25 (link)]. Total protein was extracted from kidney tissue in RIPA lysis buffer (25 mM Tris-HCl, 25 mM NaCl, 0.5 mM EDTA, 1% Triton X-100, and 0.1% SDS) with 1% PMSF protease inhibitors (P1005, Beyotime Biotechnology, China) and phosphatase inhibitors (P1081, Beyotime Biotechnology, China) added. Equal amounts of protein were separated by 10-15% SDS-PAGE and then transferred to PVDF membranes (IPVH00010, Millipore, Germany). After blocking with 5% nonfat milk for 3 h, the membranes were incubated with the primary antibodies including TGF-β1, α-SMA, Nrf2, HO-1, NQO1, ASC, caspase-1 (ab215715, ab32575, ab137550, ab13248, ab80588, ab175449, ab1872, Abcam, UK), p-Smad2, Smad2, p-Smad3, Smad3, E-cadherin, NLRP3 ((#18338, #5339, #9520, #9523, #3195, #15101, Cell Signaling Technology, USA), and cleaved caspase-1 (AF4005, Affinity Biosciences, USA) at 4°C overnight. Then, the membranes were washed 3 times with TBST and incubated with the secondary antibodies for 1 h at room temperature. After washing with TBST for a further three times, the protein bands were visualized by enhanced chemiluminescence (32134, Thermo, USA) solution and imaged with Automated Imaging System (Gene Gnome5, Synoptics Ltd, UK). GAPDH or β-actin was assumed to be similarly abundant in all samples and was used as a loading control.
+ Open protocol
+ Expand
3

Lung Tissue Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The inferior lobe of the lung tissues was homogenized in RIPA lysis buffer (Thermo Fisher Scientific, Inc.). After that, 30 μg protein was separated in 10% SDS-PAGE. Proteins were then transferred to PVDF membranes (Millipore). Then, the PVDF membranes were blocked with 5% non-fat dry milk for 1 h at room temperature and then incubated with primary antibodies against p-P65 (1 : 1000, AF2006, Affinity); P65 (1 : 1000, AF5006, Affinity); p-IKBα (1 : 1000, AF2002, Affinity); IKBα (1 : 1000, AF5002, Affinity); NLRP3 (1 : 1000, DF7438, Affinity), ASC (1 : 2000, sc-514414, Santa Cruz Biotechnology, INC), Caspase-1 p20 (1 : 2000, AF4005, Affinity), Pro-GSDMD (1 : 1000, AF4012, Affinity), GSDMD p30 (1 : 1000, DF12275, Affinity), IL-18 (1 : 1000, DF6252, Affinity), IL-1β (1 : 1000, AF5103, Affinity), and β-actin (1 : 5000, AF7018, Affinity) at 4°C overnight. Then, the membranes were then incubated with the appropriate secondary antibodies at room temperature for 2 h. β-actin was selected as the loading control. Finally, the protein bands were caught by using a Chemiluminescence image analysis system (Tanon, Shanghai, China) and analyzed with the Image J software (National Institutes of Health, USA).
+ Open protocol
+ Expand
4

Western Blot Analysis of Apoptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
First, the total protein in mouse lung tissue was collected and the BCA kit (Solarbio, pc0020) was used to detect the total protein. Then, the SDS-PAGE and transfer membrane were performed. The PVDF membrane was blocked with 5% skimmed milk powder, and then, the primary antibodies such as caspase 1, cleaved caspase 1 (AF4005, 1 : 1000, Affinity), caspase 3, and cleaved caspase 3 (AF7022, 1 : 1000, Affinity) were added and incubated overnight. Then, the membrane was rinsed and the secondary antibody GAPDH (AF7021, 1 : 5000, Affinity) was incubated. The ECL was used to detect protein bands, and the protein gray value was calculated by ImageJ.
+ Open protocol
+ Expand
5

Protein Extraction and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Radio immunoprecipitation assay (RIPA) lysis buffer (EpiZyme, Shanghai, China) was used to extract total protein from aortic tissues and HUVECs. The protein concentration was measured using the BCA detection method. Subsequently, the equivalent amount of protein was separated by 12.5% SDS‐PAGE, then wet transferred to PVDF membranes (Millipore, Boston, MA, USA) and blocked with 5% non‐fat milk for 1 h at 37°C, followed by incubated overnight at 4°C with the rabbit anti‐NLRP3 antibody (1:1000, ab263899, Abcam, MA, USA), rabbit anti‐cleaved caspase‐1 p20 antibody (1:2000, AF4005, Affinity, OH, USA), rabbit anti‐cleaved‐IL‐1β antibody (1:2000, AF4006, Affinity, OH, USA), rabbit anti‐GSDMD antibody (1:2000, AF4012, Affinity, OH, USA) or anti‐β‐actin antibody (1:1000, #4967, Cell Signaling Technology, USA). β‐actin served as the housekeeping protein control. After washing with TBST three times, the membranes were incubated with the relevant HRP‐conjugated secondary antibody at 37°C for 1 h. The chemiluminescence detection kits (Meilunbio, Dalian, China) were used to visualize protein bands. Finally, ImageJ software was used for densitometric analysis.
+ Open protocol
+ Expand
6

Immunohistochemical Analysis of PTEN, NLRP3, and Caspase-1

Check if the same lab product or an alternative is used in the 5 most similar protocols
We detected the expression of PTEN, NLRP3, and caspase-1 by immunohistochemistry. Fixed testicular tissue in 4% paraformaldehyde and made into sections. Incubations were performed using primary antibodies against PTEN (ab267787; Abcam, Cambridge, United Kingdom), cleaved Caspase-1 (AF4005; Affinity, United States) and NLRP3 (ab263899; Abcam, Cambridge, United Kingdom), and all sections were analyzed under microscopic examination.
+ Open protocol
+ Expand
7

Microglia Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Drugs were added to the BV2 microglia as previously described. Twelve hours after administration, cells were collected and cleaved; protein concentration was quantified; protein lysate (25 μL) was electrophoresed and transferred onto PVDF membrane (pore size: 0.45 μm). After the transmembrane was completed, the PVDF membrane was sealed with 5% skim milk for 2 h and incubated with the specified primary antibody—against P-AMPK (T55608S, 1:1000, Abmart, Shanghai, China), mTOR(T55306S, 1:5000, Abmart), P-mTOR (T56571S, 1:5000, Abmart), LC3-II/LCI (T55992F, 1:500, Abmart), IL-1β (TA5103, 1:500, Abmart), P62 (T55546S, 1:5000, Abmart), NLRP3 (15101s, 1:1000, Cell Signaling Technology (CST), Danvers, MA, USA), GAPDH (T0004, 1:1000, Affinity, Cincinnati, OH, USA), caspase-1 p20 (AF4005, 1:1000, Affinity) or AMPK (AF6423, 1:1000, Affinity)—at 4 °C overnight. PVDF membrane and HRP-labeled secondary antibody were cultured at room temperature for 1 h and rinsed 3 times. Visualization of the protein bands was achieved with an enhanced chemiluminescence (ECL) kit (P0018FS, Vazyme, Nanjing, China) and imaging system (3500R, Tanon, Shanghai, China), whose grayscale values were calculated using ImageJ version 5.0.
+ Open protocol
+ Expand
8

Western Blot Analysis of Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cells were lysed using lysis buffer (P0013B; Beyotime, Shanghai, China) containing PMSF (329-98-6; Nanjing Wohong, Nanjing, China) and lysate. Protein concentration was quantified using a BCA Protein Assay kit (P0009; Beyotime). Cell lysates were separated by 10% SDS-PAGE and transferred to an NC membrane (Sigma-Aldrich, St Louis, USA). After being blocked with 5% skim milk for 2 h, the membrane was incubated with the following primary antibodies: fibrinogen antibody (ab281924, 1:1000; Abcam), matrix metalloprotein 9 (MMP9) antibody (ab283575, 1:1000; Abcam), ZO-1 antibody (ab61357, 1:1000; Abcam), occludin antibody (ab216327, 1:1000; Abcam), pro caspase1 (ab179515, 1:1000; Abcam), cleaved caspase1 (AF4005, 1:1000; Affinity), NLRP3 (DF7438, 1:1000; Affinity), ASC (DF6304, 1:1000; Affinity), IL-1β (ab234437, 1:100; Abcam), IL-18 (ab191860, 1:100; Abcam), p65 antibody (ab32536, 1:2000; Abcam), p-p65 antibody (Ma5-15160, 1:1000; Thermo Fisher Scientific, Waltham, USA), GAPDH antibody (ab8245, 1:2000; Abcam). The membrane was then incubated for 1 h with HRP-labeled secondary antibodies (ab6721, 1:3000; Abcam). After three times wash with PBS, the membrane was detected using BeyoECL Plus (Beyotime).
+ Open protocol
+ Expand
9

Comprehensive Western Blotting Methodology

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed according to the manufacturer’s instructions. Radioimmunoprecipitation assay lysis buffer and EDTA-free protease inhibitor cocktail (Roche, Germany) were used for protein extraction from kidney and cell samples, and the protein concentration was determined using the BCA protein assay. After blocking with 5% skim milk, the membranes were incubated with primary antibodies, secondary antibodies, and electrochemiluminescence reagents (Bio-Rad Laboratories, Inc.). Protein levels were analyzed using Quantity One software (Bio-Rad Laboratories, Inc.), with glyceraldehyde 3-phosphate dehydrogenase (GAPDH) as the loading control. The following primary antibodies were used: NLRP3 (DF7438, Affinity, USA), Caspase-1 p20 (AF4005, Affinity, USA), GSDMD-N (ab215203, Abcam, USA), TGF-β (AF1027, Affinity, USA), Smad2/3 (AF6367, Affinity), p-Smad2/3 (AF3367, Affinity, USA), and GAPDH (60004-1-Ig, Proteintech, USA).
+ Open protocol
+ Expand
10

IHC Staining Protocol for NLRP3 and Inflammation Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
IHC staining was performed according to the commercial kits (PV-6001 and PV-6002, ZSGB-Bio, Beijing, China). Antigen retrieval of the paraffin sections was performed using the same protocol described for IF staining. Subsequently, sections were incubated with 0.3% H2O2 for 10 min to inactivate endogenous peroxidase activity and then washed with PBS. After being blocked with 5% goat serum for 15 min, slices were incubated overnight at 4 °C with the primary antibodies as follows: rabbit anti-NLRP3 antibody (ab214185, 1:200, Abcam), rabbit anti-cleaved-caspase 1 p20 (1:100, AF4005, Affinity), IL-1β (1:100, GTX74034, Gentex), rabbit anti-GSDMD (1:800, ab219800, Abcam), mouse anti-IBA-1 (1:300, GB12105, Servicebio), rabbit anti-Ly6G (1:500, GB11229, Servicebio), rabbit anti-CD68 (1:100, DF7518, Affinity). The sections were incubated with enzyme-conjugated goat anti-mouse IgG or goat anti-rabbit IgG polymer for 30 min. Finally, immunoreactivity was visualized using 3,3-diaminobenzidine (DAB, ZLI-9017, ZSGB-Bio) followed by restaining with hematoxylin. Images were captured by a light microscope (Leica, DM2500, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!