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33 protocols using ab15160

1

Histopathological Analysis of Tumor Tissues

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Necropsies were performed at the end of the experiments. Upon necropsy, tumors and tissues were fixed in formalin for 24 h. Fixed tissues were dehydrated and embedded in paraffin wax. Sections (5 μm) were stained with hematoxylin and eosin (H&E) for histological analysis or processed for immunohistochemistry. Immunohistochemical analyses were performed as follows: the sections were (1) deparaffinized; (2) incubated with 10% horse serum for 30 min at 37 °C to block non-specific binding; and (3) washed three times with sterile phosphate-buffered saline (PBS) (pH 7.5) prior to incubation with the appropriate primary antibodies diluted in horse serum 10%. Primary antibodies were used as follows: 1/100 dilution of anti-chromogranin A (ab15160, Abcam, Cambridge, UK); 1/2000 dilution of anti-CGRP (C8198, MilliporeSigma); 1/200 dilution of anti-TTF1 (ab76013, Abcam, Cambridge, UK); 1/50 dilution of anti-p63 (ab53039-100, Abcam, Cambridge, UK); and 1/100 dilution of anti-CC10 (sc-25554, Santa Cruz Cruz Biotecnology, Dallas, TX, USA). Secondary antibodies were used as follows: 1/1000 biotin anti-mouse (No. 715-065-151, Jackson ImmunoResearch, West Grove, PA, USA) and 1/1000 biotin anti-rabbit (No. 711-065-152, Jackson ImmunoResearch).
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2

Intestinal Organoid Culture Reagents

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The recombinant proteins and neutralizing antibodies for mouse TNF and IL-6 were obtained from R&D Systems. Defined fetal bovine serum (FBS) was purchased from HyClone, vitronectin was from Thermo Fisher Scientific, and insulin, dexamethazone and a protease inhibitor cocktail were from Sigma. 3-Isobutyl-1-methylxanthine (IBMX) and pioglitazone were obtained from Wako. CAPE and Galiellalactone were from Tocris and Cayman Chemical, respectively. Antibodies for villin1 (ab3304), mucin 2 (Muc2) (ab11197 for human, ab76774 for mouse), and chromogranin A (ChgA) (ab15160) were purchased from Abcam. Anti-E-cadherin antibody (3195) was from Cell Signaling, anti-lysozyme antibody (A0099) was from Dako, and anti-perilipin1 antibody (GP29) was from Progen. Secondary antibodies for immunostaining were from Jackson ImmunoResearch.
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3

Immunohistochemical Analysis of Xenograft and PDX Models

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Preparation of paraffin-embedded tissue sections and immunohistochemical analyses of PC3 and V16A xenografts and NEPC PDXs were carried out at histology core facility of Princess Margaret Cancer Centre. Paraffin sections at 4 μm thickness were dried at 60 °C oven for 2 hours before staining. The immunohistochemistry (IHC) was performed according to the manufacture’s guidelines using BenchMark XT-an automated slide strainer (Ventana Medical System) with standard antigen retrieval (CC1, pH 8.0, #950-124). For PIMO staining, 60 mg/kg PIMO HCl (Hypoxyprobe™-1, Hypoxyprobe) was intraperitoneal injected into tumor bearing mice and tumors were collected 60 minutes later. Mouse monoclonal anti-PIMO antibody (MAb1, Hypoxyprobe, 1:400 dilution), rabbit polyclonal anti-CA9 antibody (NB100-417, Novus, 1:1000 dilution), rabbit polyclonal anti-SYP antibody (ab32127, Abcam, 1:1000 dilution) and rabbit polyclonal anti-CHGA antibody (ab15160, Abcam, 1:1000 dilution) were used for immunohistochemistry. Biotinylated anti-rabbit IgG (Vector, BA-1000) was added to slides at 1:200 for 12 minutes. The primary-secondary antibody complex was then visualized with Ventana iView DAB Detection Kit (#760-091). The slides were counterstained with Harris hematoxylin, dehydrated in graded alcohol, cleared in xylene and coverslipped in Permount.
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4

Quantifying Amidated Chromogranin A

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To mimic the effect of gene silencing, cells were cultured for 24 h with the irreversible PAM inhibitor 4-phenyl 3-butenoic acid (4P3BA; Sigma) at a concentration of 500 μM67 (link). Whole-cell extracts (WCE) from siRNA or inhibitor-treated EndoC-βH1 cells were prepared as previously described68 (link). Supernatant was harvested directly from cells and filtered with a 0.22μm filter. Protein yields were determined by the Bio-Rad Protein Assay according to manufacturer’s instructions. For western blotting, 10μg WCE and 0.5% total supernatant volume were analysied via denaturing SDS-PAGE. Antibodies specific for CgA-Gly (Abcam, ab52983)45 and total CgA (Abcam, ab15160) were used to calculate the ratio of amidated to non-amidated CgA using Image Lab 5.0.
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5

Immunostaining and Clearing of Pancreatic Tissue

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Thick 100 μm cryostat sections were rehydrated in PBS. Sections and whole mount pancreata were blocked overnight in PBS, 2% donkey serum and 0.5% Triton-100X. The samples were incubated in primary antibodies (Chromogranin A, 1:180 from Abcam, ab15160; insulin, 1:100, from Abcam, ab7842; glucagon 1:200, from Abcam, ab10988); and Dolichos biflorus agglutinin (DBA) biotinylated (1:270, from Vectorlabs, B-1035) for 3 days at 4 °C. Secondary antibodies were applied (from Thermo Fisher Scientific) and AF647-Streptavidin (1:800, from Thermo Fisher Scientific, S21374), BV510-Streptavidin (1:600, from Biolegend, 405233) for 2 days at 4°C. All tissues were cleared with RapiClear 1.52 (from SunJin Lab, RC152001).
Thin sections were incubated in 2% Serum, 0.1% Triton-100X in PBS for 30 min, subsequently incubated in primary antibody in 0.01% Triton-100X in PBS overnight (insulin 1:100, from Abcam, ab7842, glucagon 1:200 from Abcam, ab10988, cleaved caspase 3, 1:400, from Cell Signalling, 9664S), washed 3 times for 10 min the next day, and incubated with secondary antibody in 0.01% Triton-100X for 3 h, washed and mounted.
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6

Immunohistochemical Analysis of Castration-Resistant PCa

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Paraffin-embedded specimens from patients with primary and relapsed castration-resistant PCa that had been collected between 1990 and 2010 at Mackay Memorial Hospital were included in this study. Ethics was approved by the Mackay Memorial Hospital Institute Review Board. Informed consent was written. Tissue sections were deparaffinized in xylene, rehydrated through graded ethanol (100, 90, 80, 70, 50%), subjected to antigen retrieval by microwaving in 10 mM citrate buffer (pH 6.0) for 10 min, blocked for endogenous peroxidase activity with 3% H2O2 for 10 min at room temperature, and then blocked with antibody diluent containing background-reducing components (DAKO, S302281). Finally, the slides were stained overnight at 4°C with beclin1 (GeneTex, GTX61619), LC3 (Novus Biologicals, NB110-57179), REST (BETHYL, IHC-00141), or CgA (abcam, ab15160) specific antibodies and visualized following standard protocol using 3-amino-9-ethylcarbazole (AEC) as chromogen (DAKO, K346430) in the presence of hematoxylin counterstaining. The histology and staining was evaluated by a pathologist in a blind fashion using a four-tier scale representing negative (0), weak (1), intermediate (2), and strong (3) signals.
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7

Immunofluorescence of Organoid Cultures

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Immunofluorescence was performed as previously described (Li et al. 2018 (link)). Briefly, organoids were fixed in 4% paraformaldehyde for 1 h at room temperature. Organoids were washed by PBS for 3 times and permeabilized by 0.5% Triton X-100 for 1 h at room temperature. Then, samples were blocked with PBT solution (3% BSA and 0.01% Triton X-100 in PBS) for 2 h at room temperature and incubated with primary antibodies overnight at 4 °C. The fluorescein-labeled secondary antibodies (Life Technologies, 1:300) and 4′, 6-diamidino-2-phenylindole (DAPI) were added for 1 h at room temperature next day. The following antibodies were used for immunofluorescence: rabbit anti-Fabp1 (Abcam, ab171739, 1:300); mouse anti-E-cadherin (B&D, 610182, 1:300); rabbit anti-Muc2 (Santa Cruze, sc-15334, 1:300); rabbit anti-ChgA (Abcam, ab15160, 1:300). The images were acquired from Olympus FV3000 Laser Scanning Microscope.
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8

Immunohistochemical Analysis of Pancreatic Tissues

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Normal pancreatic tissues and tumors were collected from mice at predetermined time periods or when their condition deteriorated and they had to be euthanized. Tissues were fixed in 4% neutral-buffered formaldehyde for at least 24 hours, followed by dehydration and paraffin embedding. For all immunostaining experiments, appropriate positive and negative controls were run concurrently for all the applied antisera on the adjacent pancreas sections. Histopathological analysis was carried out on 3-µm sections stained with Mayer’s H&E. Immunostaining was performed on serial sections essentially, as previously described (Kirschner, Kusewitt et al. 2005 (link); Szarek, Farrand et al. 2008 (link)) using primary antibodies against PRKAR1A (ab38936, 1:100; Abcam, Cambridge, MA), Chromogranin A (ab15160, Abcam, Cambridge, MA), Chymotrypsin (ab118845, Abcam, Cambridge, MA), PDX1 (ab47383, Abcam, Cambridge, MA) and Insulin (ab7842, Abcam, Cambridge, MA). Antibody solutions 1:200 in blocking buffer (PBS, 0.01% azide, 10% normal donkey serum - Sigma-Aldrich, Inc., Saint Louis, MO, USA) were used.
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9

Multimarker Immunostaining for Tissue Characterization

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Immunostaining for lysosome, Sucrase-Isomaltase, Ki-67, mMECA-32, and ChromograninA was performed on frozen sections using rabbit anti-lysozyme (A0099, DAKO, 1:1000), mouse anti-sucrase-isomaltase (sc-393470, clone: C-8, Santa Cruz, 1:50), rabbit anti-ki-67 (ab16667, clone: SP6, abcam, 1:500), rat anti-MECA-32 (NB100-77668, clone: MECA-32, NOVUS Biologicals, 1:50), and rabbit anti-ChoromograninA (ab15160, Abcam, 1:400) antibodies, respectively. Immunostaining for GFP to detect Lgr5 expression was performed on frozen sections or paraffin-embedded sections using rabbit anti-GFP (2956, clone: D5.1, Cell Signaling, 1:100) antibody. For DAB staining, slides were then incubated with amino acid polymer conjugated with peroxidase and Fab’ (Histofine simple stain rabbit MAX-PO (R), 414341, Nichirei Bioscience Inc.). Slides were visualized using metal-enhanced 3,3′- diaminobenzidine (DAB) and counterstained with hematoxylin. Images were acquired using an OLYMPUS BX41 microscope (OLYMPUS Corporation). When co-staining of Lys and GFP or co-staining with rainbow colors were performed, Alexa488-, Alexa594-, and Alexa750-conjugated secondary antibodies (1:200, Invitrogen) were used, followed by nuclei-staining using Hoechst33342 (Thermo Fisher Scientific, H3570). Fluorescent images were taken with an OLYMPUS BX63 microscope (Olympus Corporation, Tokyo, Japan).
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10

Immunofluorescent Analysis of Mouse Enteroids

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The fixed mouse enteroids were permeabilized with 0.5% (v/v) Triton X-100/PBS, washed by PBS containing 0.1% (w/v) BSA/0.02% (v/v) Triton-X/0.05% (v/v) Tween 20 and blocked with 10% (v/v) normal goat serum. Primary antibodies were used to stain Chga (rabbit anti-Chga, 1:100; ab15160; Abcam) and PH3 (rabbit anti-Phospho-Histone H3 (Ser10), 1:100, 9701S; Cell Signaling) and Xiap (1:100; rabbit, NBP2-20918; Novus Biologicals, Centennial, CO). The staining was visualized by fluorescence microscopy with fluorescent-conjugated secondary antibodies (goat anti-rabbit; Alexa Fluor 488, 1:400; Cat. #A-11034; Thermo Fisher Scientific). Nuclei were counterstained with Hoechst 33258 dye (1:1000). For EdU staining assays, enteroids were treated with 10-mM EdU 6 hours before the harvest time point follow by the manufacturer’s protocol of Click-iT Plus EdU Alexa Fluor 488/594 imaging Kit (C10637, C10639; Thermo Fisher Scientific). The immunofluorescent staining was visualized by ZEISS Axiovert 200M inverted microscope. The z-stack bright field images were taken by ZEISS Axiovert 200M inverted microscope for bud count analysis.
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