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26 protocols using cd31 apc

1

Cardiac Tissue Cell Isolation and Analysis

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Isolation of cells from the freshly collected cardiac tissue was performed by cutting the heart into pieces, following by digestion buffer (Liberase, Roche) at 37 °C for 15 min. All prepared cells were suspended in PBS and then conjugated with antibodies for 30 min where indicated. Antibodies used in this study include LIVE/DEAD Fixable Near-IR Dead Cell Stain Kit (1:1000, Invitrogen, L34975), Hoechst (1:1000, Invitrogen, H3570), PDGFRA-APC (1:100, Invitrogen, 17–1401), CD31-APC (1:100, Invitrogen, 17–0319-42), CD34-FITC (1:100, BD Biosciences, 560,238). Cells were then analyzed by using the BD FACSVerse Flow Cytometer (BD Biosciences).
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2

Isolation and Characterization of Hair Matrix Keratinocytes

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Whole back skin was isolated from mice at P4.5 and incubated with 0.5% of Dispase II (Roche, #45147700) at 4°C overnight in 1× Hanks’ balanced salt solution (Sigma-Aldrich, #H2387) without Ca2+ and Mg2+. Epidermis and dermis were cut into small pieces and digested with Accutase (Gibco, #2310194) containing 0.1% of Liberase DH (Roche, #05401054001) at 37°C and centrifuged at 800 rpm for 20 min. Cells were filtered with a 70-μm nylon mesh and stained with CD140a-Allophycocyanin (APC) (1:150; Invitrogen, #2213095), CD31-APC (1:150; Invitrogen, #219898), CD207-APC (1:150; BioLegend, #B301300), CD117-APC (1:150; Invitrogen, #2162256), α6-integrin-Phycoerythrin (PE) (1:500; Invitrogen, #2196653), and Sca1-Fluorescein isothyocyanate (FITC) (1:300; eBioscience, #E00760-1633) antibodies for 30 min on ice and washed by using 1% fetal bovine serum (FBS), followed by staining with anti–Ephrin-B1 antibodies (1:25; R&D Systems, #BAF473), streptavidin-APC/fire–Alexa Fluor 750 (1:250; BioLegend, #405250), and LEAVE/DEAD Fixable Violet Dead Cell Stain Kit (1:1000; Life Technologies, #L34955) for 30 min on ice intercepted by 1% FBS washing between each staining. Hair matrix keratinocytes were separated from other skin cell populations based on their Ephrin-B1+ staining (43 (link)).
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3

Immune Cell Phenotyping by Flow Cytometry

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After isolation, remaining cells were incubated with anti-mouse CD16/CD32 (1:50, BD Pharmingen #553142) to block endogenous Fc for 10 min on ice. After this, cells were stained with antibodies including CD45-EF450 (1:2000, eBioscience #48–0451–82) and CD31-APC (1:100, eBioscience #17–0311–82) for 45 min at 4 °C. After washing, the cells were resuspended in 500 μl buffer and analyzed on an LSRFortessa (BD Pharmingen) cell analyzer. Obtained data were analyzed by Summit software (Beckman Coulter).
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4

Isolation of Pancreatic Cell Populations

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Pancreatic tissue isolation was performed as previously36 (link) with minor modifications. Briefly, pancreas was minced into small pieces, and transferred to 3 mL 0.5 mg/mL Collagenase P (Roche, 11213873001) dissolved in HBSS together with 5 mM glucose. Then the digestion medium was put into the water bath at 37 °C 5 min for acclimatization and gently shaking another 5 min for digestion. To stop the digestion, 10 mL DMEM containing 1% FBS was added to the medium. Tissues were pipetted up and down for further dissociation and filtered by the 70-μm filter. Then cells were centrifuged for 5 min at 1200 rpm and incubated with 1 mL red blood cell lysis buffer (eBioscience, 00-4333-57) at room temperature for 5 min. 10 mL cold PBS containing 1% FBS was added to stop digestion, followed by centrifugation. 1% Fc in PBS was added for 5 min to block, then the isolated cells were stained with fluorochrome-conjugated antibodies including CD45-APC (eBioscience, 17-0451-82, 1:400), CD31-APC (eBioscience, 17-0311-82, 1:40), CD140a-APC (eBioscience, 17-1401-81, 1:100), CD326-APC (eBioscience, 17-5791-82, 1:200) for 30 min at 4 °C. After washing with cold PBS, cells were resuspended in PBS containing DAPI (1:1000). Then flow cytometry experiments were performed using the Beckman Cytoflex LX or sorted using the Sony MA900 flow cytometer.
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5

Retinal Endothelial Cell Isolation and Cell Cycle Analysis

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Retinas were harvested at P5, dissected in cold PBS and digested in 1 mg ml−1 Collagenase type II (Sigma) in DMEM (Sigma). Cells were incubated with CD31-APC (BD 551262, 2 ng ml−1) and CD45-FITC (11-0452-85, 5 ng ml−1, eBioscience), Hoechst (B2261, 25 μg ml−1, Sigma Aldrich) and Pyronin Y (P9172, 200 ng ml−1, Sigma Aldrich). CD31+/CD45− endothelial cells were isolated by FACS and further analysed for their cell cycle distribution by two-dimensional analysis of Hoechst and Pyronin Y fluorescence signal.
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6

Isolation and Culture of Murine Bone Marrow-Derived Mesenchymal Stem Cells

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The bone marrow of 14-day-old C57BL/6 mice was harvested and passed through a 40-μm cell strainer, yielding single cells. Subsequently, the single-cell suspension was incubated with antibodies specific for CD51-PE (1:200 dilution, BD, USA), CD45-FITC (1:200 dilution, eBioscience, USA), Ter119-PECY7 (1:200 dilution; eBioscience) and CD31-APC (dilution 1:200; eBioscience) at 4 °C for 30 min. CD51CD45Ter119CD31 cells (CD51bMSCs) and CD51+CD45Ter119CD31 cells (CD51+bMSCs) were sorted using flow cytometry (Influx, BD). Then, the isolated cells were allowed to adhere to culture plates (Corning, USA) in medium described as follows: DMEM/F12 (Gibco, USA) containing 10 ng/ml EGF (Pepro tech, USA), 10 ng/ml bFGF (Pepro tech), 2% B27 (Invitrogen, USA), 0.1 mM β-mercaptoethanol (Invitrogen), 1% l-glutamine (Sigma Aldrich, USA), 1% foetal bovine serum (Gibco) and 100 IU/ml penicillin/streptomycin (Invitrogen). Cells were cultured at 37 °C in a 5% CO2 atmosphere and propagated every 2 or 3 days.
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7

Multimarker Flow Cytometry Analysis

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Flow cytometric analysis for cell surface markers, were done using antibodies CD31-APC (Catalog#17-0311, eBioScience), CD34-FITC (Catalog#11-0341, eBiosience), CD133-FITC (Catalog#11-1331, eBioscience), Flk1-APC (Catalog#17-5821, eBioscience), VECAD-APC (Catalog#17-1441, eBioscience), CD45-APC(Catalog#103111, Biolegend), ckit APC (Catalog#561074,BD Bioscience), DDR2 (Catalog#SC-7555,Santa Cruz) and Vimentin (Catalog#Ab1620, Millipore). For Vimentin and DDR2, a secondary APC conjugated anti-goat antibody was used (Catalog#SC3860, Santa Cruz). Cultured cardiac fibroblasts were dissociated using accutase (Innovative Cell Technologies, Inc.,) and immunostained in FACS buffer (0.1% BSA PBS ) at 1 × 106/ml for 20–30 minutes at 4°C, followed by washing twice with FACS buffer and subsequently analyzed in Beckman-Coulter (Dako) CyAn ADP. Data obtained was analyzed and represented using Flowjo software.
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8

Cardiomyocyte Isolation and Characterization

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Dissociated cardiomyocytes were centrifuged and incubated with red-blood-cell lysis buffer (2–5 ml, eBioscience, 00-4333-57) for 5 min at room temperature. After washing with an equal volume of isolation buffer (2 mM EDTA and 0.25% BSA in PBS), cells were centrifuged at 20 g for 3 min. The re-suspended cells were first stained with LIVE/DEAD Fixable Violet Dead Cell Stain Kit (Life Technology, L34955) according to the manufacturer’s instruction. Then cells were washed with isolation buffer and centrifuge with 20 g for 3 min, and the pellets were blocked in Fc block (eBioscience, 14-0161, 1:100) for 5 min at room temperature and then directly incubated with antibodies mixture containing CD31 APC (eBioscience, 17-0311-80, 1:40), CD140a APC (eBioscience, 17-1401-81, 1:500), CD45 APC (eBioscience, 17-0451-82, 1:400) at 4 °C for 30 min. After washing with isolation buffer, cells were re-suspended with 500 µl isolation buffer and finally analyzed with FACS Aria II Flow Cytometer (BD Biosciences). The raw data were processed by FlowJo software (Tree star).
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9

Lung Cell Isolation and Flow Cytometry

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At day 28, the remaining mice (n=8 per group) were anesthetized with intraperitoneal injection of 10% chlorine hydrate (3 mL/kg), followed by right atrium perfusion with 10 mL PBS and endotracheal instillation of 3 mL collagenase IV (150 U/mL; Sigma-Aldrich, St Louis, MO, USA) and 0.3 mL 1% low melting point agarose. After 2–3 min, whole lung tissues were removed and 1 mL collagenase IV was added. After incubation at 37°C for 1 h, lung tissues were minced in a Petri dish and then washed with DNase I (20 U/μL; Roche, Basel, Switzerland). The lung emulsion mixed with the used washing buffer was again transferred to collagenase IV solution, incubated at 37°C for 15 min, filtered through 100 μm, 70 μm, and 40 μm cell strainers (BD Biosciences, Franklin Lakes, NJ, USA), and centrifuged at 300× g at 4°C for 5 min. Cells were resuspended in flow cytometry buffer (2% fetal bovine serum, 1 mM ethylene diamine tetraacetic acid, 0.01% NaN3 in PBS) at 1×106/100 μL and incubated at 4°C for 30 min with CD31-APC (eBioscience, San Diego, CA, USA; 0.2 μg/μL), CD45-APC (0.2 μg/μL; eBioscience), and Sca-1-fluorescein isothiocyanate (0.5 μg/μL; eBioscience). Flow cytometry was performed using a BD FACSCanto II flow cytometry machine. Data were analyzed with FlowJo 8.7.3 (FlowJo, Ashland, OR, USA) software.
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10

Immune Cell Surface Marker Analysis

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After isolation, remaining cells were incubated with anti-mouse CD16/CD32 (1:50, BD Pharmingen#553142) to block endogenous Fc for 10 minutes on ice. After this, cells were stained with antibodies including CD45-EF450 (1:2000, eBioscience #48-0451-82) and CD31-APC (1:100, eBioscience #17-0311-82) for 45 minutes at 4°C. After wash, the cells were resuspended in 500 μl buffer and analyzed on an LSR Fortessa (BD Pharmingen) cell analyzer. Obtained data were analyzed by Summit software (Beckman Coulter).
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