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22 protocols using mz16a

1

Microscopy Setup for High-Resolution Imaging

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The Leica MZ16A microsystem was equipped with a DFC500 camera. This camera is able to make pictures with a total size of 12 MP (4080 × 3072). The objective used is a 0.63× Leica Planapo. The lights used are two lights controlled by a Leica KL 1500 LCD. The software controling the Z-stage is LAS Core by Leica. The aperture was set to its maximal opening. The exposure time was set according to the object and distance of the lights. Because two direct lights were used, the light needed to be diffused. This was done by using chalk paper and/or opaque plastic (Leica, S.D. ).
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2

Landmark-Based Cephalic Capsule Analysis

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Cephalic capsules were photographed using a Leica DFC295 digital camera (3M Pixel) on a trinocular mount of a Leica MZ16a stereo-microscope and saved in JPEG format using the Leica Application Suite v3.8.0 (Leica Microsystems Limited, Switzerland). Fourteen homologue type 1 landmarks (Fig. 2), (Table S1, Table S2) were marked on the wireworm mandible, so that they could be accurately and repeatedly identified. Each landmark was digitised using tpsDIG V2.17 [66] and imported into MorphoJ v1.04d for further statistical analyses [67] (link). The dataset containing the raw coordinates used in this study is available as supplementary material. Measurement error (ME) has a critical importance when analyzing shape. In order to assess the ME level, the cephalic capsules of 35 individual beetles were digitized twice [68] .
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3

Larval Growth Monitoring Protocol

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Larvae were inspected for movement to determine death. Furthermore, throughout both experiments, the length of each larva was measured every 2–3 days under an imaging stereo–microscope (Leica MZ16 A, Leitz Wetzlar, Germany). Also, for the Azadirachtin experiment, the body mass of each larva was recorded with a microbalance (0.001 g; Mettler Toledo, XP2U, Switzerland) again every 2 to 3 days.
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4

Harderian Gland Whole Mount Preparation

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Harderian glands from both eyes were isolated and weighed (Mettler-Toledo, AJ100, Greifensee, Switzerland) and their average weight was used for subsequent calculations. For whole mount preparation organs were spread on glass slides and fixed in Carnoy fixative over night at room temperature. After fixation tissue samples were gradually changed to distilled water and stained in carmine and dehydrated in a graded ethanol series, cleared in xylene and mounted in Eukitt (Sigma, 03989). Reagents were prepared as in http://mammary.nih.gov/tools/histological/Histology/ index.html. Photographs were taken on a stereomicroscope (Leica, MZ16 A, Wetzlar, Germany).
Statistical analyses were calculated and blotted in Graphpad Prism in a Student t-test (2 tailed, unpaired samples), the error bars represent SD. N = number of independent biological samples.
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5

Photographic Documentation of Extinct Arachnids

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Hand specimen photographs of Plesiosiro madeleyi are available in the redescription of Dunlop (1999) (link). No comparable modern photographs of Goniotarbus angulatus exist. Accordingly a plate of hand specimen photographs is published herein showing the holotype, and only known specimen (NHM In 22838: Fig. 2). This was studied and photographed using a Leica MZ16A stereomicroscope and incident light. Photographs taken at multiple focal depths were combined using the software CombineZM (see Bercovici, Hadley & Villanueva-Amadoz, 2009 ). Photographs of the whole fossil—which was too large for the field of view—were created by manually stitching sections using the open source raster graphics editor GIMP 2.8, and figures were assembled in Inkscape 0.48. For comparative purposes specimens of a related species (Petrunkevitch, 1949 ), Goniotarbus tuberculatus (NHM In 31249, NHM In 18340, and NHM In 22840), were also studied.
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6

Comparing High-End Microscopy Approaches

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We used two high-end approaches that were already available in-house, a Leica MZ16A set-up and a Leica Z6APO. These solutions will be compared to the Canon-Cognisys set-up we describe above.
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7

Gonopod Morphological Analysis Protocol

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This study is based on material collected in 2010 by R.C. Drewes. Some additional samples were obtained from the Muséum national d’Histoire naturelle (MNHN), Paris, France and the Royal Museum for Central Africa (MRAC), Tervuren, Belgium.
All samples are stored in 70% ethanol. Photographs were made with a Leica DFC 500 digital camera mounted on a Leica MZ16A stereo microscope. Images were processed with a Leica Application Suite program. Specimens for scanning electron microscopy (SEM) were air-dried, mounted on aluminium stubs, coated with gold and studied using a JEOL JSM-6480LV scanning electron microscope.
The terminology used to describe the gonopod conformations follows that of Hoffman (2008).
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8

Fiber and Weaving Analysis of Textile Samples

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The identification of the fiber and weaving pattern was performed with a light microscope (a low-power Leica MZ 16A and a high-power Leica DVM5000, respectively). A Y172 (Shanghai Precision Instruments Co., Ltd., Shanghai, China) Hastelloy slicer was used to observe the cross-section characteristics of the fiber. A morphology analysis was carried out by a high-vacuum Jeol JSM-6360LV scanning electron microscope (SEM) at an acceleration voltage of 8 kV and a working distance of 24 mm. The sample was gold-coated. UV imaging for the curtain was undertaken with a Canon camera at maximum exposure only under UV radiation in a darkroom.
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9

Comprehensive Honeybee Necropsy Protocol

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Bees necropsied (usually 10 at a time) were removed from their storage bottles and allowed to dry slightly on a paper towel. We made two shallow incisions along the lateral sides of a bee’s abdomen, in the pleural region, using forceps and micro-scissors (EMS high-precision tweezers, style 5B with extra fine and bent tips; straight Dumont positive-action tweezers, Style SS; Vannas Capsulotomy scissors with 5 mm straight blade). Incisions started at the posterior end of the abdomen and ended near the petiole. Unless otherwise noted, once the incisions were made, we detached the abdomen from the thorax and placed it in a Petri-dish containing 70% ethanol to facilitate tissue separation. Under a stereo microscope (Leica MZ16 A), we removed abdominal sclerites, clearing away the sternites and tergites from around the gastro-intestinal tract until the internal tissues were completely visible. Following Snodgrass[35 ], we carefully examined each bee’s abdominal cavity, gastrointestinal tract, and sting region for gross lesions and other symptoms, and scored 17 different visible conditions as listed in Table 1.
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10

Confocal Imaging Techniques and Parameters

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Confocal images were generated as previously described (Arkhipova et al., 2012 (link)) with a Zeiss LSM Exciter5 microscope equipped with 25 mW Argon laser (468, 488 and 514 nm), 1 mW 543 nm He-Ne laser, and a 5 mW 633 nm He-Ne laser. Fluorescence detection was performed with the following filters: BP 505-550 (eGFP and Alexa 488), LP 560 (E2Crimson, mCherry) and LP 650 (Alexa 633, Click-IT 647). Additional confocal images were generated with a Leica TCS SP5 II Laser using 488 nm and 561 nm excitation wavelengths. Fluorescence detection was performed a bandwidth PMT 500 to 550 nm and a Hyd 3 bandwidth 600 to 650 nm. Adobe Photoshop CS5 was used for image arrangement and adjustment. Epifluorescence images were taken at the Leica MZ16A stereomicroscope using either a Leica DFC320 camera or a Zeiss AxioCam ICm1 camera.
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