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13 protocols using anti c ebpα

1

Western Blot Analysis of C/EBPα

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Western blots were performed as previously described in ref. 22 (link). The following antibodies were used: rabbit mAb Anti-C/EBPα (EP709Y, Abcam), rabbit mAb Anti-C/EBPα (EP708Y, Abcam), rabbit pAb Anti-GAPDH (sc-25778, Santa Cruz Biotech.), rabbit mAb Anti-GAPDH (14C10, CST). Donkey-anti-rabbit-HRP (NA934V, GE-Healthcare) or goat-anti-rabbit (sc-2004, Santa Cruz Biotech.) served as secondary antibodies. For chemiluminescence detection, we used Western Blot Ultra or Western Blot Premium Substrate (Licor) and analyzed the membranes using C-Digit Chemiluminescent Western Blot Scanner (Licor). Evaluation of data were performed using ImageJ software (NIH). Full western blot gel scans are included as Supplementary Figs. 58.
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2

Examining HDAC1 Promoter by ChIP

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ChIP assays were performed using the EZ chip kit (Millipore, Burlington, MA, USA) according to the manufacturer’s protocol. DNA protein crosslinks were generated by adding 1% formaldehyde to cells and incubating for 10 min. Cross linked chromatin DNA was then sonicated to yield chromatin fragments of 200-300 base pairs that were incubated with anti-C/EBPα (Abcam, Cambridge, UK) or IgG at 4 °C. The promoter region of HDAC1 was examined by RT-qPCR.
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3

Immunofluorescence Assay for Cell Characterization

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Cells were cultured on microscope glasses (Sigma-Aldrich). Coverslips were washed twice with PBS and fixed using PBS containing 4% paraformaldehyde (Merck) for 20 min at room temperature. Cells were washed twice with PBS and permeabilized with PBS containing 0.25% Triton (Sigma) for 5 min at room temperature. Posteriorly, cells were pre-incubated with PBS containing 2% of bovine serum albumin (Sigma) for 60 min at room temperature. After the blocking step, cells were incubated overnight at 4° with anti-C/EBPα (Abcam, ab128482), anti-E-cadherin (Abcam, ab1416), and anti-Fibronectin (BD Biosciences, 610077). Cells were washed twice in PBS, and respective secondary antibodies (BD Biosciences) were incubated for 60 min, at room temperature. Lastly, cells were washed twice in PBS and coverslips were mounted in Prolong Gold anti-fade reagent with DAPI (Invitrogen). Confocal images were acquired using a Zeiss LSM 700 fluorescence microscope (Zeiss).
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4

Chitosan-based Apoptosis and Inflammation Study

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Water-soluble liquid of chitosan was donated by Shanghai Qisheng Biologic Preparation Co., Ltd (Shanghai, China). The Cell Counting Kit-8 (CCK-8) was purchased from Biotool, Inc. (Houston, TX). Annexin V-FITC/PI apoptosis and cell cycle detection kits were purchased from BD Biosciences (Franklin Lakes, NJ). Gentamycin, penicillin, fetal bovine serum (FBS), and Dulbecco’s modified Eagle’s medium (DMEM) were purchased from HyClone Laboratories, Inc. (Logan, UT). SYBR Green qPCR master mix, the GoScript Reverse Transcription System, and TRIzol were purchased from Biotool, Inc., Promega (Madison, WI), and Invitrogen (Carlsbad, CA), respectively. The IL-6 and PGE-2 enzyme-linked immunosorbent assay (ELISA) kit, SP600125 (JNK inhibitor), anti-COX-2, anti-JNK, anti-adiponectin, anti-C/EBPα, anti-PPAR-γ, anti-FABP4, and recombinant human IL-1β were purchased from Abcam (Cambridge, MA).
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5

Quantitative Protein Analysis by Western Blot

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Western blotting (WB) was used to detect protein quantity. In brief, the sample was lysed in RIPA lysis solution to extract total protein and denatured. Next, the sample proteins were separated via SDS-PAGE gel electrophoresis under conditions involving a constant voltage of 100 V. In this study, the proteins were transferred from SDS-PAGE gel to PVDF membranes using a semi-dry transfer method. The membranes were then blocked for 4 h, and incubated with primary antibodies Anti-CEBPα (Abcam, 1:1000) Anti-PPARγ (Abcam, 1:1000) and FABP3 (Cell Signaling, 1:1500) overnight at 4 °C. Next, the membranes were washed thrice with TBST (Tris-buffered saline) and incubated with secondary antibody, rabbit anti-goat IgG antibody (Novogene, 1:5000) at room temperature for 1.5 h. Finally, a BeyoECL plus kit (Beyotime) was used to detect the protein signal. β-tubulin (Cell Signaling, 1:2000) was used as a reference protein and blots were analysed using IPWIN software.
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6

Immunoblot Analysis of ABR and C/EBPα

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Immunoblot analyses were performed as previously described [29 (link)]. For ABR protein detection, a mouse monoclonal antibody anti-ABR (Abcam), and for C/EBPα protein detection, a rabbit monoclonal antibody anti-C/EBPα (Abcam) was used. Polyclonal rabbit anti-GAPDH (sc-25778; Santa Cruz Biotechnology) and b-tubulin (sc-9104) antibodies were used for normalization. The immunoreactivity was determined using an enhanced chemiluminescence method (Amersham Biosciences) according to the manufacturer’s instructions. The band intensities were quantified using ImageJ software (National Institute of Health, Bethesda, MD).
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7

ChIP Assay for hADSCs

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ChIP was performed as previously described56 (link). When cellular confluence reached 80%, hADSCs were cross-linked with 1% formaldehyde (Sigma) at 37 °C for 15 min. The cells were then lysed, and DNA-protein complexes were immunoprecipitated. Next, the formaldehyde-cross-linked DNA was reverse cross-linked using a ChIP Assay Kit (Millipore) according to the manufacturer’s protocol. DNA-chromatin complexes were immunoprecipitated with anti-C/EBPα (1:300, Abcam) or mouse IgG (Millipore) as an internal control. The primers used for analysing the precipitated DNA are listed in Table 2.
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8

Whole-Cell Lysate Preparation and Immunoblotting

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Whole-cell lysates were prepared from cells collected in lysis buffer (50 mM Tris pH7.5, 150 mM NaCl, 1 mM EDTA, 1% NP40, 0.5% sodium deoxycholate, 1.0% SDS, 2 mM NaF, 2 mM Na3VO4, and protease inhibitors (Roche) followed by sonication and centrifugation at 13,000g for 10 minutes. Tumor lysates were prepared by homogenizing tumor tissue in lysis buffer and centrifuging at 13,000g for 10 minutes at 4°C. Proteins were quantified using a BCA assay kit, separated by electrophoresis on SDS PAGE gels, and transferred to PVDF membranes. After one hour in blocking buffer (SuperBlock), membranes were incubated overnight with primary antibodies. The following antibodies were used: anti-p-Akt (Cell Signaling), anti-Akt (Cell Signaling), anti-rpS6 (Abcam), anti-p-rpS6 (Abcam), anti-mTOR (Sigma-Aldrich), anti-p-mTOR (Sigma-Aldrich), anti-ERK (Abcam), anti-p-ERK (Abcam), anti-LC3B-II (Abcam), anti-Atg7 (Santa Cruz Biotechnology), anti-Atg12 (Santa Cruz Biotechnology), anti-Beclin-1 (Abcam), anti-C/EBPα (Abcam), anti-PPARγ (Abcam), anti-FABP4 (Abcam), anti-FAS (Abcam), anti-Tubulin (Abcam), and anti-β-Actin (Santa Cruz Biotechnology). The anti-Tubulin and anti-β-Actin were used as controls. Specific protein bands were imaged using secondary antibody conjugated with horseradish peroxidase and chemiluminescent ECL reagents. Image J was used for quantification.
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9

Western Blot Analysis of Osteogenic Markers

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Western blot analyses were performed using a standard protocol as previously described54 (link). Confluent hADSCs were lysed with RIPA lysis buffer (Beyotime Institute of Biotechnology, China) supplemented with 1 nM of PMSF (Invitrogen), after which the collected protein contents were measured using a BCA protein assay kit (Thermo Fisher Scientific Inc., Waltham, MA). Proteins were separated by 10% SDS-PAGE electrophoresis and electro-blotted onto PVDF membranes (Millipore). The membranes were then incubated with optimal concentrations of the following primary antibodies: anti-Runx2 (1:1500, Abcam, Cambridge, MA, USA), anti-Ocn (1:1000, Abcam), anti-BSP (1:1000, Abcam), anti-GSK3β (1:1000, Abcam), anti-β-catenin (1:2000, Abcam), anti-C/EBPα (1:1000, Abcam) and anti-β-actin (1:3000, Abcam). Immunoreactive bands were detected using anti-rabbit (1:5000) or anti-mouse (1:5000) fluorescein-conjugated secondary antibodies (Abcam) and visualized by Odyssey V3.0 image scanning. All of the procedures were performed three times.
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10

Western Blot Analysis of Osteogenic Markers

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Protein extracts were run on 10–15% SDS–polyacrylamide gel electrophoresis (PAGE) and transferred to nitrocellulose membranes. After blocking with 5% skim milk, the membranes were probed with primary antibodies, afterwards incubated with horseradish peroxidase-conjugated secondary antibodies. Finally, the bands were visualized using a chemiluminescence reagent (Proteintech, Wuhan, China). The primary antibodies included antibodies from Cell Signaling Technology (Danvers, MA, USA): anti-Runx2 (#12,556), anti-phospho-LRP6 (Ser1490) (#2568), anti-non-phospho-β-catenin (#8814), anti-C/EBPα (#8178), and anti-PPARγ (#2443); antibodies from Abcam (Cambridge, MA, USA): anti-NDRG1 (ab124689), anti-osterix (ab94744), anti-LRP6 (ab134146), anti-transcription factor 7 like 2 (TCF7L2) (ab76151), and anti-alkaline phosphatase (ALP) (ab108337); antibodies from Proteintech (Wuhan, China): anti-fatty acid binding protein 4 (FABP4) (12802-1-AP), anti-osteopontin (25715-1-AP), anti-β-catenin (51067-2-AP), and anti-β-actin (66009-1-Ig).
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