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33 protocols using histrap excel column

1

Purification of SARS-CoV-2 Spike Proteins

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RBD-His protein was expressed in Expi293 cells and purified on Ni-NTA resin (#88221, Thermo Fisher) followed by size-exclusion chromatography on a Superdex 200 gel filtration column in PBS (Amanat et al., 2020 (link)). S1-S2-His (referred as S) protein from Wuhan-Hu-1 strain and RBD from variants (Alpha, Beta, Gamma, and Delta) were expressed baculovirus-free in High Five insect cells (Bleckmann et al., 2019 (link)) and purified on HisTrap excel column (Cytiva) followed by preparative size exclusion chromatography on 16/600 Superdex 200 pg column (Cytiva) (Bertoglio et al., 2021 (link); Korn et al., 2020 (link)).
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2

IMAC Purification of SpyTag-VP2 IBs

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A first step of concentration and partial purification of the protein was carried out by IMAC. SpyTag-VP2 IBs from a 1500 mL of E. coli BL21(DE3) culture were resuspended in 50 mL of solubilization buffer as described elsewhere (Cayetano-Cruz et al. 2018 (link)). Then, batches of 5 mL of the solubilized IBs were loaded manually into a 5 mL HisTrap Excel column (Cytiva) equilibrated with equilibration buffer (2 M GdnHCl, 0.3 M NaCl, 50 mM sodium phosphate, pH 7.4), washed with 3 column volumes of equilibration buffer, and eluted with 5 column volumes of elution buffer (equilibration buffer + 500 mM imidazole). Eluted protein batches were concentrated, and the buffer was exchanged for storage buffer (5 M GdnHCl, 0.3 M NaCl, 50 mM Tris–HCl, pH 8.0) using Amicon centrifugal filters (MWCO 50 kDa, Millipore).
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3

Removing His10-tag from AcnB via TEV Cleavage

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To remove the His10-tag from a sample of AcnB isolated from E. coli BL21(DE3) a TEV cleavage was performed. After addition of 0.5 mM EDTA and 1 mM DTT, the tag was cleaved by incubating the protein sample with TEV protease in a ratio of 1:100 at 4 °C while gently rocking overnight. The reaction components were removed by dialysis in buffer containing 50 mM Tris pH 8.0 and 150 mM NaCl, before applying the protein solution to a HisTrap excel column (Cytiva) to separate uncleaved protein, the His10-tag, and the protease from the target protein. Fractions containing the target protein were pooled.
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4

Recombinant Antibody Production and Purification

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cDNAs encoding the BCR heavy and light variable regions were synthesized by GeneScript and subcloned into pFUSE-CHIg-HG1 and pFUSE2ss-CHIg-hK vectors (InvivoGen), respectively. Full-length antibodies were expressed using ExpiCHO cells according to standard protocol. Cells were transfected with 0.6 μg/mL light chain plasmid and 0.4 μg/mL heavy chain plasmid. The medium was collected at Day 8 post-transfection. Antibodies from the medium were purified using Pierce Protein A/G Agarose (ThermoFisher, Cat# 20424) with the standard protocol. Filtered medium (0.22 μm) was loaded onto Protein A/G Agarose pre-equilibrated with binding buffer (25 mM Tris pH 8.0, 150 mM NaCl, 1 mM EDTA). After washing with the same buffer for three times, the protein was eluted with 5 CV of 0.1 M Glycine pH 2.7 and the pH of eluent was immediately adjusted with 0.5 CV 1 M Tris pH 8.0. Protein was concentrated and further applied to Superdex 200 10/300 Increase (Cytiva) in Dulbecco’s PBS (Sigma) buffer. For SW186 Fab protein, the cDNA of heavy chain and light chain was subcloned into modified pCAG-His vector with an IL2 signal peptide at N-terminus. A stop codon was introduced to the C-terminus of light chain to make it a tag-free protein. The protein was then expressed the same way as full-length antibodies, and purified with HisTrap Excel column (Cytiva) using the AKTA system.
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5

Purification of His-tagged proteins from E. coli

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BL21 (DE3) pLysS cultures containing the desired overexpression vectors were grown overnight at 37°C shaking at 250 rpm. Overnight cultures were used as a 1% inoculum for 1 L LB cultures, which were grown at 30°C, shaking at 220 rpm until reaching the mid‐log phase (OD600 = 0.6). Cells were induced with 1 mM IPTG and grown for a further 2 h. Cells were harvested at 5000 xg, 4°C, 10 min, and then frozen at –80°C.
Cells were resuspended in sample buffer (20 mM HEPES, 250 mM NaCl, 10 mM MgCl2 2.5% glycerol pH 6.8) and lysed using an Avestin cell disruptor. The insoluble fraction was removed by centrifugation at 33000 xg for 40 min and the soluble fraction was loaded onto a pre‐equilibrated 1 ml His‐Trap Excel column (Cytiva). The column was washed in 8% elution buffer (20 mM HEPES, 250 mM NaCl, 10 mM MgCl2 1 M imidazole, 2.5% glycerol pH 6.8) and eluted over a gradient of 8%–100% elution buffer over 10 ml. Fractions were analyzed by SDS‐PAGE and buffer exchange was carried out using Zeba Desalt spin columns (Thermo Scientific) as per the manufacturer's protocol.
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6

Soluble Extracellular Cadherin Repeat 1 Binding Assay

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A soluble extracellular cadherin repeat 1 (sEC1, GenBank: NM_002587, residues 1 to 172) construct was synthesized and cloned into the pCDNA3.1(+) mammalian cell expression vector by GenScript with a C-terminal GSG linker and decahistidine tag. sEC1 was expressed in ExpiCHO cells and purified through a HisTrap Excel column (Cytiva) using anÄKTA pure protein purification system (Cytiva), and then labeled with Alexa Fluor 647 (Thermo Fisher). Expi293F cells transfected with a plasmid encoding full-length ANDV M segment, as described previously, were incubated with 10 μg/mL of each mAb for 1 hour at 4°C. A control mAb, DENV 2D22 directed to dengue virus envelope protein, was added as a negative control, and unlabeled sEC1 was added at 50 μg/mL as a positive control. Labeled sEC1 was added directly to the cell suspension and first mAb at a final concentration of 200 ng/mL and incubated for an additional hour at 4°C. Cells then were washed with flow cytometry buffer and stained with 0.5 μg/mL of 4′,6-diamidino-2-phenylindole (DAPI). Alexa Fluor 647 and DAPI staining were measured with an iQue Screener Plus flow cytometer (Intellicyt) and quantified using the manufacturer’s ForeCyt software. Binding in the presence of antibody was divided by the maximal binding signal of labeled sEC1 alone to determine the % receptor blocking.
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7

Recombinant SARS-CoV-2 Spike RBD Production

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For comparative analyses of glycosylation and MW determination (see below), we recombinantly produced RBD in human cells (hu-RBD), to simulate the viral protein produced during a natural infection in humans. The pCAGGS plasmid for production of the C-terminal His-tagged SARS-CoV-2 Spike RBD (#NR_52310) was obtained from BEI Resources (NY, United States). Recombinant SARS-CoV-2 Spike RBD was produced using HEK293-F cells (Invitrogen) cultivated in suspension using FreeStyle medium (Invitrogen) as described in Faravelli et al. (2021) (link). The cell medium containing secreted SARS-Cov2 Spike RBD was collected 6 days after transfection. The sample was loaded onto a 5-ml His-Trap excel column (Cytiva) using a peristaltic pump and then eluted with a 0–250 mM imidazole gradient using a NGC FPLC system (Bio-Rad Laboratories). The eluted samples were subjected to immediate concentration to 1 mg ml–1 with concomitant buffer exchange with fresh PBS to remove imidazole using Amicon centrifugal filters (Merck), flash-frozen in liquid nitrogen, and kept at -80°C until usage. Before analysis, the protein samples were thawed and subjected to gel filtration using a Superdex 200 10/300 increase column (Cytiva) equilibrated with 25 mM HEPES/NaOH, 150 mM NaCl, pH 7.2 (Bruni et al., 2020 (link)).
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8

Soluble Extracellular Cadherin Repeat 1 Binding Assay

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A soluble extracellular cadherin repeat 1 (sEC1, GenBank: NM_002587, residues 1 to 172) construct was synthesized and cloned into the pCDNA3.1(+) mammalian cell expression vector by GenScript with a C-terminal GSG linker and decahistidine tag. sEC1 was expressed in ExpiCHO cells and purified through a HisTrap Excel column (Cytiva) using anÄKTA pure protein purification system (Cytiva), and then labeled with Alexa Fluor 647 (Thermo Fisher). Expi293F cells transfected with a plasmid encoding full-length ANDV M segment, as described previously, were incubated with 10 μg/mL of each mAb for 1 hour at 4°C. A control mAb, DENV 2D22 directed to dengue virus envelope protein, was added as a negative control, and unlabeled sEC1 was added at 50 μg/mL as a positive control. Labeled sEC1 was added directly to the cell suspension and first mAb at a final concentration of 200 ng/mL and incubated for an additional hour at 4°C. Cells then were washed with flow cytometry buffer and stained with 0.5 μg/mL of 4′,6-diamidino-2-phenylindole (DAPI). Alexa Fluor 647 and DAPI staining were measured with an iQue Screener Plus flow cytometer (Intellicyt) and quantified using the manufacturer’s ForeCyt software. Binding in the presence of antibody was divided by the maximal binding signal of labeled sEC1 alone to determine the % receptor blocking.
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9

Recombinant anti-CD3ε single-chain Fv

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A synthetic gene encoding an anti-human CD3ε monoclonal antibody (clone UCHT1) in single-chain Fv format was synthesized (Integrated DNA Technologies). To construct expression vectors encoding scDbs, genes encoding the variable domains of heavy and light chains of the HapImmune™ antibodies and UCHT1 with a His-tag at the C-terminus were cloned into the mammalian expression vector pBCAG. Expi293F cells (Thermo Fisher) were transiently transfected with expression vectors using the ExpiFectamine 293 Transfection Kit (Thermo Fisher), according to the manufacturer’s protocol. Transfected cells were incubated at 37°C with 8% CO2 for 7 days, and scDbs were purified from supernatants using a HisTrap excel column (Cytiva) followed by size exclusion chromatography using a Superdex 200 10/300 column (Cytiva). The purity of the scDb proteins was analyzed by SDS-PAGE.
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10

Recombinant Human TPO Purification

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Full-length human TPO ORF with a C-terminal 6× His tag, followed by a single stop codon sequence, was synthesized and cloned into pXC17.4 (Lonza Inc., Basel, Switzerland) with HindIII/EcoRI sites, expressed, and purified using the GS Xceed™ Gene Expression System (Lonza). The TPO ORF with a C-terminal 6× His tag in the pXC17.4 vector was transfected into CHOK1SV GS-KO cells by electroporation. For protein purification, TPO-expressing cells were cultured in CD-CHO medium (Thermo Fisher Scientific) for 5 days. The supernatant was collected and loaded onto a HisTrap excel column (Cytiva) equilibrated in 20 mM phosphate (pH 7.4) and 300 mM NaCl buffer. The bound protein was eluted with a phosphate buffer containing 300 mM imidazole. Fractions containing rhTPO-His, as verified by SDS-PAGE, were pooled and loaded onto a 10 mL HiLoad 26/600 Superdex 200 pg column (Cytiva) equilibrated in 2 × PBS. Fractions containing rhTPO-His were added to glycerol at a final concentration of 50% (v/v) and stored at −80 °C until use.
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