The largest database of trusted experimental protocols

Qrt supermix 2

Manufactured by Vazyme
Sourced in China

QRT SuperMix II is a real-time quantitative reverse transcription PCR (qRT-PCR) reagent developed by Vazyme. It is designed for the detection and quantification of RNA targets. The reagent contains all the necessary components for performing one-step qRT-PCR, including a reverse transcriptase and a DNA polymerase.

Automatically generated - may contain errors

3 protocols using qrt supermix 2

1

Quantitative Analysis of circRNA and mRNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was extracted using TRIzol reagent (9109, TaKaRa) according to the manufacturer's protocol. First, genomic DNA was removed using template 200 ng RNA mixed with 2 μl 4 × gDNA wiper mix (R123‐01, Vazyme) and nuclease free water up to 8 μl of the final reaction volume. This reaction mixture was incubated at 42°C for 2 min. Reverse transcription was then performed using the reaction tube mentioned above mixed with 2 μl of 5 × qRT SuperMix II (R123‐01, Vazyme) and nuclease free water up to 10 μl of the final reaction volume. This reaction mixture was incubated at 50°C for 15 min and then for 2 min at 85°C. Next, the RT products (cDNA) obtained in the previous step were used as the template for qPCR. The qPCR reactions were carried out using SYBR Green qPCR Master Mix (Q141‐02, Vazyme) containing 1 μl of cDNA in a 10 μl final volume reaction following the manufacturer's instructions in an Applied Biosystems qPCR System (StepOne, Thermo Fisher, USA) with the following cycling conditions: 5 min at 95°C followed by 30 cycles of 10 s at 95°C and 30 s at 60°C. The primers used to amplify circRNA and mRNA transcripts were synthesized by Invitrogen. The sequences of the primers are summarized in Table S3.
+ Open protocol
+ Expand
2

Chromatin Immunoprecipitation and qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP assays were carried out as previous described protocol [24 (link)]. IPEC-J2 cells were subjected to nucleus isolation and sonication and then incubated with anti-histone H4 (16047-1-AP, Proteintech), H4K8ac (PTM-164, PTM BIO), H4K12ac (PTM-165, PTM BIO), H4K16ac (PTM-166, PTM BIO), with protein G magnetic beads (20421, Pierce) together. The DNA was then precipitated and stored at -80°C. The prepared DNA was applied for qPCR using qRT SuperMix II (Vazyme Biotech Co., Ltd., Nanjing, Jiangsu, China) with Real-time quantitative PCR instrument ABI7500 (Applied Biosystems, Foster City, CA, USA) detection system. The enrichment levels were normalized to the input sample.
+ Open protocol
+ Expand
3

RT-qPCR Validation of RNA-seq Candidate Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
To confirm the RNA-seq results, seven candidate genes were chosen for expression validation using RT-qPCR with gene-specific primers (Table S2). Root tissues were collected at S0, S1, S2, and S3; three biological replicates were performed for each tissue sample per time point. Total RNA was extracted using RNAsimple Total RNA Kit (Tiangen, Beijing, China) and purified using the gDNA wiper Mix (Vazyme, Nanjing, China). cDNA was reverse transcribed using qRT SuperMix II (Vazyme, Nanjing, China). The qRT–PCR reaction was performed in a CFX96 Real-Time System (Bio-Rad, Munich, Germany). The transcript level of each gene was normalized to the expression of the ZmTubulin1 gene (Zm00001d013367). The relative gene expression was calculated using the 2−ΔΔCT method [40 (link)].
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!