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13 protocols using trypsin without edta

1

Isolation of Keratinocytes from Mouse Skin

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To isolate keratinocytes from mouse back skin, shaved skin was floated
on 0.25% Trypsin without EDTA (Life Technologies) for 2 hours at 37°C.
Then the epidermis was scraped off the dermis, and cells were disaggregated by
gentle mincing with a scalpel and pipetting. For back skin in late anagen the
dermis was further minced and digested for 30 minutes at 37°C low-calcium
medium containing 1.25 mg/ml of Collagenase Type I, 0.5 mg/ml of Collagenase
Type II, 0.5 mg/ml of Collagenase Type IV (all from Worthington) and 0.1 mg/ml
of Hyaluronidase (Sigma-Aldrich).
To disaggregate cells from squamous tumours, the tumours were minced
with a scalpel and incubated for 1-2 hours at 37°C in low-calcium medium
containing 1.25 mg/ml of Collagenase Type I, 0.5 mg/ml of Collagenase Type II,
0.5 mg/ml of Collagenase Type IV (all from Worthington) and 0.1 mg/ml of
Hyaluronidase (Sigma-Aldrich). Then pieces were further incubated for another
hour with Trypsin without EDTA (Life Technologies) and cells disaggregated by
scraping with a scalpel blade. Trypsin was inactivated by washing the cell
suspension with low-calcium media containing 10% of FBS (Life Technologies).
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2

Isolation of Keratinocytes from Mouse Skin

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To isolate keratinocytes from mouse back skin, shaved skin was floated
on 0.25% Trypsin without EDTA (Life Technologies) for 2 hours at 37°C.
Then the epidermis was scraped off the dermis, and cells were disaggregated by
gentle mincing with a scalpel and pipetting. For back skin in late anagen the
dermis was further minced and digested for 30 minutes at 37°C low-calcium
medium containing 1.25 mg/ml of Collagenase Type I, 0.5 mg/ml of Collagenase
Type II, 0.5 mg/ml of Collagenase Type IV (all from Worthington) and 0.1 mg/ml
of Hyaluronidase (Sigma-Aldrich).
To disaggregate cells from squamous tumours, the tumours were minced
with a scalpel and incubated for 1-2 hours at 37°C in low-calcium medium
containing 1.25 mg/ml of Collagenase Type I, 0.5 mg/ml of Collagenase Type II,
0.5 mg/ml of Collagenase Type IV (all from Worthington) and 0.1 mg/ml of
Hyaluronidase (Sigma-Aldrich). Then pieces were further incubated for another
hour with Trypsin without EDTA (Life Technologies) and cells disaggregated by
scraping with a scalpel blade. Trypsin was inactivated by washing the cell
suspension with low-calcium media containing 10% of FBS (Life Technologies).
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3

Annexin V-FITC/PI Apoptosis Assay

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Cell apoptosis was detected using the Annexin V-FITC/propidium iodide (PI) apoptosis kit (Invitrogen). Briefly, chondrocytes were cultured for 48 h, digested using trypsin without EDTA (Thermo Fisher Scientific), and washed with PBS. The cells were collected and adjusted to a cell density of 1 × 106 cells/ml. Then, cells were stained with Annexin V-FITC and PI for 15 min. At last, a BD FACS flow cytometer (BD Biosciences, Franklin Lakes, NJ, USA) was used to detect the fluorescence intensity.
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4

Chondrocyte Apoptosis and Cell Cycle Assays

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Human primary chondrocytes subjected to different treatments were collected using trypsin without EDTA (Thermo Fisher Scientific) and washed twice with PBS. For the apoptosis assay, the cells were stained using an Annexin V-fluorescein isothiocyanate/propidium iodide (FITC/PI) Apoptosis Kit (BD Biosciences, Franklin Lakes, NJ, USA) according to the manufacturer’s instructions and then detected using a BD FACS flow cytometer (BD Biosciences). For the cell cycle assay, the cells were fixed overnight in absolute ethanol, washed twice, and incubated with PI/RNase staining buffer (BD Biosciences, Franklin Lakes, NJ, USA), and the specimens were then detected using a BD FACS flow cytometer (BD Biosciences).
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5

Subcellular Fractionation and Omics Extraction

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U2OS cells from a single 80% confluent 500 cm2 cell culture dish (Sigma-Aldrich) were detached using trypsin without EDTA (Thermo Fisher Scientific), pelleted 5 min at 250 x g, washed with PBS, resuspended in 50 ml of PBS and crosslinked in solution at 254 nm at 400 mJ/cm2. Cells were pelleted again for 5 min at 250 x g, resuspended in 1 ml of lysis buffer (0.25 M sucrose, 10 mM HEPES pH 7.4) containing protease inhibitors (Roche), and lysed with a ball-bearing homogenizer (Isobiotec) on ice. Unlysed cells were removed by centrifugation at 200 x g, 5 min at 4 °C. The supernatant was transferred to a new tube and centrifuged at 1000 x g, 10 min at 4 ºC with the pellet collected as ‘heavy membrane fraction’. The supernatant was centrifuged again at 12.200 x g with the pellet collected as the ‘light membrane fraction’. The supernatant was collected as cytosolic fraction, frozen and dried by sublimation by SpeedVac (Labconco). Pellets from the heavy membranes, light membranes and cytosol were re-suspended in Trizol and RBPome and “total” proteome were extracted using OOPS.
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6

Annexin-V-FITC Apoptosis Assay by Flow Cytometry

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After 48 h of transfection, the cells were detached with trypsin without EDTA (Thermo Fisher Scientific, Rockford, IL, USA) and collected in a flow tube. Following centrifugation at 2200 ×g for 30 m, the supernatant was discarded. The cells were washed with precooled PBS for 3 times, and centrifuged at 2200 ×g for 20 m, and the supernatant was discarded. According to Annexin-V-Fluorescein 5-isothiocyanate (FITC) apoptosis detection kit (Sigma-Aldrich Chemical Company), Annexin-V-FITC and propidium iodide (PI) (50: 1: 2) were mixed into Annexin-V-FITC/PI staining solution. Following the addition of 100 μL dye solution and incubation at room temperature for 15 m, the cells were added with 1 mL 2-[4-(2-Hydroxyethyl)−1-piperazinyl]ethanesulfonicacid buffer solution (Thermo Fisher Scientific). The apoptosis was detected by flow cytometry at 488 nm.
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7

Quantifying Apoptosis and ROS in LED-Irradiated HMEC-1 Cells

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HMEC-1 cells were grown in 6-well plates at a density of 5 × 105 and irradiated by different dosages of 590 nm LED. After 24 h, cells were isolated with 0.25% trypsin without EDTA (Gibco, Grand Island, NY, USA), centrifuged, resuspended with 4 °C PBS. Subsequently, irradiated cells were washed, stained with Annexin-V FITC & PI (BD Biosciences; San Jose, CA, USA), measured with a C6 flow cytometer (BD) and analyzed using FlowJo (BD). For reactive oxygen species (ROS) measurement, gathered cells were resuspended in serum-free medium containing DCFH-DA (1:1000, Biodragon immunotechnologies), kept at 37 °C for 20 min, washed and detected by flow cytometry.
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8

Annexin-V-FITC Apoptosis Assay

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Cells were digested with trypsin without EDTA (Gibco) and were washed twice with phosphate-buffered saline. The cells were treated with Annexin-V-FITC binding buffer, Annexin-V-FITC (Beyotime, China), and PI for 20 min at room temperature. Cell apoptosis was assessed by flow cytometric analysis using an FC500 flow cytometer (Beckman-Coulter). All experiments were performed in triplicate, and each data point represented the mean results of the triplicate experiments.
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9

Plasma-Treated Cell Apoptosis Analysis

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The Annexin V-FITC Apoptosis Detection Kit (Dojindo Laboratories, Japan) for CytoFLEX (Beckman Coulter, America) was used to distinguish viable cells, apoptotic cells, and necrosis cells. The specific process was as follows.
After the plasma-treated cells had been cultured for 24 h and 48 h, respectively, these cells (including the cell supernatant) were digested with trypsin (without EDTA) (Gibco, America) and collected. We had added 3 mL of PBS and centrifuged it at 1000 rpm for 3 min, then discarded the supernatant. The cell pellet was resuspended with 300 μL of binding buffer. 5 μL of Annexin V-FITC and 5 μL of PI solution were added to the cell suspension. And it was incubated for 15 min in the dark at room temperature. Finally, the results should be tested within 1 h.
Trypan blue is a regent which can differentiate the cell viability. The cells which can be stained to blue were dead. We use the Trypan Blue Staining Cell Viability Assay Kit (Beyotime, China) to calculate the number of viable cells after plasma treatment.
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10

Luteolin Induces Apoptosis in NCI-H460 Cells

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Annexin V-fluorescein isothiocyanate (FITC)/PI double staining was performed to quantitatively determine the percentage of cells undergoing apoptosis. Briefly, the NCI-H460 cells were seeded into a 6-well plates at 2×105 cells/well and at 70–80% confluence, the cells were treated with 20, 40 or 80 µM luteolin or 300 nM Taxol at 37°C. Following treatment for 48 h at 37°C, the cellular monolayer was released using trypsin without EDTA (Gibco Life Technologies, Carlsbad, CA, USA). The cells were resuspended and incubated with annexin V-FITC (KeyGen Biotech Co., Ltd., Nanjing, China) for 15 min at room temperature, followed by PI staining. The cells were analyzed using a flow cytometer (Becton Dickinson, Mountain View, CA, USA). annexin V-FITC and PI double-negative cells were defined as normal cells, whereas annexin V-FITC-positive and PI-negative cells were defined as early apoptotic cells and annexin V-FITC and PI double-positive cells were defined as late apoptotic and necrotic cells. The annexin V-FITC-PI binding assay was determined at least three times. CellQuest software (BD Biosciences San Jose, CA, USA) was used to calculate the percentage distribution of normal, early apoptotic, late apoptotic and necrotic cells.
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