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17 protocols using hplc grade acetic acid

1

Antioxidant Assays in HepG2 Cells

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Gallic acid, chlorogenic acid, (+)-catechin hydrate, vanillic acid, caffeic acid, syringic acid, epicatechin, 4-methylcatechol, coumarin, ferulic acid, resveratrol, quercetin, 3,4-dihydroxybenzoic acid, p-coumaric acid, rutin, sinapic acid, 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), Folin–Ciocalteu’s phenol reagent, 2′,7′-dichlorofluorescin diacetate (DCFH-DA), fluorescein disodium salt, 2,2′-azobis (2-amidinopropane) dihydrochloride (ABAP) and quercetin dehydrate were purchased from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco’s Modified Eagle’s Medium (DMEM), dimethyl sulphoxide, HPLC-grade acetic acid and acetonitrile were obtained from Thermo Fisher Scientific (Waltham, MA, USA). Human liver cancer cells (HepG2 cells) were obtained from the American Type Culture Collection (ATCC) (Rockville, MD, USA). Fetal bovine serum (FBS) was obtained from Haoyang Biologicals (Tianjin, China). Deionised water was prepared using a Milli-Q water purification system (Billerica, MA, USA).
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2

Quantification of Ochratoxin A in Foods

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Food-grade oat flour was obtained from the Grain Millers, Inc. (Eugene, OR, USA), and food-grade rice flour was obtained from Bob’s Red Mill Natural Foods (Milwaukee, OR, USA). Food-grade fructose and sodium bicarbonate were purchased from Now Foods (Bloomingdale, IL, USA), Church & Dwight Co. (Arm & Hammer®, Ewing, NJ, USA), respectively. HPLC-grade acetic acid (99.5%), acetonitrile, and methanol as well as phosphate-buffered saline (PBS) tablets were obtained from Fischer Scientific (Pittsburgh, PA, USA). Water (HPLC-grade) was purchased from Macron Fine Chemicals (Center Valley, PA, USA). Commercial OchraTest WB immunoaffinity columns (IAC) were purchased from VICAM (Watertown, MA, USA) for sample cleanup and purification. OTA stock solution (100 mg/L) was prepared in methanol and further diluted with 50% methanol (methanol:water = 50:50; v/v) to prepare working standard solutions. All standard solutions were stored in amber vials at −20 °C.
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3

Preparation and Storage of Dried Oenanthe javanica Powder

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O. javanica was purchased from Nonghyup mart (Gochang, Jeonbuk, Korea) in June 2021 and dried at 60 °C using the forced convection dry oven (FC 49, Lab House, Seoul, Korea) for 24 h. Dried O. javanica were pulverized using a food grinder (Hanil HMF-3800, Seoul, Korea) and then passed through a 0.42 mm sieve. Powdered O. javanica was stored in polyethylene bag at 4 °C for later use. HPLC grade acetic acid and acetonitrile used for substance analysis of O. javanica were purchased from Thermo Fisher Sci., Inc. (Waltham, MA, USA). Deionized water (≥ 18 Ω) was produced in the laboratory using a Milli-Q purification system (Millipore, Burlington, VT, USA).
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4

LC-MS/MS Proteomic Protocol

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MS-grade water, acetonitrile (ACN), methanol, formic acid (FA), and high-performance liquid chromatography (HPLC)–grade acetic acid were purchased from Thermo Fisher Scientific (Pittsburgh, PA). Ammonium bicarbonate (NH4HCO3), urea, dithiothreitol (DTT), iodoacetamide (IAA), and 3-(trimethoxysilyl)propyl methacrylate were from Sigma-Aldrich (St. Louis, MO). Hydrofluoric acid (HF; 48 to 51% solution in water) and acrylamide were purchased from Acros Organics (NJ, USA). Fused silica capillaries (inner diameter, 50 μm/outer diameter, 360 μm) were purchased from Polymicro Technologies (Phoenix, AZ). cOmplete, Mini protease inhibitor cocktail (EASYpacks) was from Roche (Indianapolis, IN).
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5

Acrylamide Proteomic Sample Preparation

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Acrylamide was purchased from Acros Organics (NJ, USA). Standard proteins, ammonium bicarbonate (NH4HCO3), urea, dithiothreitol (DTT), iodoacetamide (IAA) and 3-(trimethoxysilyl) propyl methacrylate were purchased from Sigma-Aldrich (St. Louis, MO). LC/MS grade water, acetonitrile (ACN), methanol, formic acid and HPLC-grade acetic acid were purchased from Fisher Scientific (Pittsburgh, PA). Aqueous mixtures were filtered with Nalgene Rapid-Flow Filter units (Thermo scientific) with 0.2 μm CN membrane and 50 mm diameter. Fused silica capillaries (50 μm i.d./360 μm o.d.) were obtained from Poly-micro Technologies (Phoenix, AZ).
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6

Mass Spectrometry-based Proteomic Analysis

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All reagents were bought from Sigma-Aldrich (St. Louis, MO) unless stated otherwise. LC/MS grade water, formic acid (FA), methanol, acetonitrile (ACN), HPLC grade acetic acid (AA) and hydrofluoric acid (HF) were purchased from Fisher Scientific (Pittsburgh, PA). Acrylamide was obtained from Acros Organics (NJ, USA). Fused silica capillaries (50 μm i.d./360 μm o.d.) were purchased from Polymicro Technologies (Phoenix, AZ).
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7

Phytochemical Analysis of Pueraria Extracts

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Folin-Ciocalteu's reagent, 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), 2,2′-Azobis(2-methylpropionamidine) dihydrochloride (AAPH), fluorescein sodium salt, 2′,7′-dichlorofluorescin diacetate (DCFH-DA), Tris(hydroxymethyl)methyl aminomethane, β-Nicotinamide Adenine Dinucleotide (β-NAD), β-Mercatoethanol (β-Me) and α-D-glucopyranoside (pNPG) were obtained from Sigma-Aldrich (St. Louis, MO, USA). The enzymes used, including alcohol dehydrogenase (ADH) from saccharomyces cerevisiae, potassium-activated aldehyde dehydrogenase (ALDH) from yeast, α-glucosidase from saccharomyces cerevisiae, and α-amylase from porcine pancreas were all purchased from Sigma-Aldrich (St. Louis, MO, USA). Standard phenolic compounds including 3′-hydroxypuerarin, 6″-O-xylosidepuerarin, puerarin, mirificin, 3″-methyoxypuerarin, daidzin, rutin, ferulic acid, genistin, phlorizin, ononin, daidzein, genistein, quercitrin, and p-coumaric acid were obtained from Yuanye Biotechnology Co., Ltd. (Shanghai, China). HPLC-grade acetic acid and acetonitrile were purchased from Fisher Scientific (Waltham, MA, USA). All other reagents used were of analytical grade.
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8

Zebrafish Brain Proteome Analysis

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Acrylamide was purchased from Acros Organics (NJ, USA). Standard proteins, ammonium bicarbonate (NH4HCO3), urea, dithiothreitol (DTT), iodoacetamide (IAA) and 3-(Trimethoxysilyl)propyl methacrylate were purchased from Sigma-Aldrich (St. Louis, MO). LC/MS grade water, acetonitrile (ACN), methanol, formic acid and HPLC-grade acetic acid were purchased from Fisher Scientific (Pittsburgh, PA). Fused silica capillaries (50 μm i.d./360 μm o.d.) were obtained from Polymicro Technologies (Phoenix, AZ). Complete, mini protease inhibitor cocktail (provided in EASYpacks) was bought from Roche (Indianapolis, IN). Mammalian cell-PE LB™ buffer containing NP-40 detergent was purchased from G-Biosciences (St. Louis, MO) for protein extraction from zebrafish brain samples.
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9

Synthesis and Characterization of NADESs

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Choline chloride, betaine, L-proline, lactic acid, malic acid, glacial acetic acid, glucose, fructose, xylitol, glycerol, ethylene glycol, 1,4-butanediol, urea, and levulinic acid for the synthesis of NADESs were purchased from Aladdin Reagent Company (Shanghai, China). The standard compound rutin (purity > 99.5%) was purchased from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China). HPLC-grade acetic acid and methanol were all purchased from Fisher Scientific (Waltham, MA, USA). Macroporous resins (D101, AB-8, and DM130) were purchased from Anhui Sanxing Resin Technology Co., Ltd. (Anhui, China). 1,1-diphenyl-2-picrylhydrazyl (DPPH) was purchased from Sigma-Aldrich Chemical Co., Ltd. (St. Louis, MO, USA). Other experimental supplies were from Weihai Academy of Agricultural Sciences (Weihai, China). All other reagents and chemicals were of analytical grade.
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10

Quantification of Lipid-Lowering Drugs

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Acetone, acetonitrile, propylene glycol, methanol, water, and HPLC-grade acetic acid were purchased from Fisher Scientific (Waltham, MA, USA). Pravastatin-d3, pitavastatin-d5, rosuvastatin-d3, fluvastatin-d6, and 4-OH-atorvastatin-d5 were purchased from BOC Sciences (Shirley, NY, USA). Lovastatin, fenofibrate, fenofibric acid, atorvastatin, simvastatin, simvastatin acid (tenivastatin), rosuvastatin, clofibrate, clofibric acid, and gemfibrozil were purchased from Millipore Sigma (St. Louis, MO, USA). N-desmethyl rosuvastatin was purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Pravastatin, Lovastatin acid, 4-OH-atorvastatin, 2-OH-atorvastatin, pitavastatin, fluvastatin, simvastatin-d6, and atorvastatin-d5 were purchased from Cayman Chemicals (Ann Arbor, MI, USA). 2-OH-atorvastatin-d5 and N-desmethyl-rosuvastatin-d3 were purchased from TRC Canada (Toronto, ON, Canada). Clofibrate-d4, clofibric acid-d4, fenofibrate-d6, fenofibric acid-d6, and gemfibrozil-d6 were purchased from CDN Isotopes (Pointe-Claire, Quebec, QC, Canada).
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