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Tnt coupled reticulocyte system

Manufactured by Promega

The TNT-coupled reticulocyte system is a cell-free protein expression system that enables the rapid and efficient production of proteins from DNA templates. It utilizes the natural protein synthesis machinery of rabbit reticulocyte lysate to translate mRNA into proteins. This system is designed for quick, high-yield, and cost-effective protein expression.

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6 protocols using tnt coupled reticulocyte system

1

In Vitro Synthesis and Detection of Biotinylated Proteins

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RNAs were synthesized in vitro with the MEGAscript In Vitro Transcription kit (Ambion, Waltham, MA) according to the manufacturer’s instructions. Equal amounts (1 µg) of DNA were added to the TnT Coupled Reticulocyte System (Promega) for in vitro translation and the proteins were labeled with the Transcend™-tRNA using the Transcend™ Non-Radioactive Translation Detection System (Promega) under conditions recommended by the manufacturer. In brief, reactions were incubated for 90 min at 30°C and analyzed by 10% SDS–PAGE. Gels were transferred to PVDF membrane and membranes were blocked in a solution of 0.5% Tween 20 in Tris-buffer (TBS-T). Streptavidin-alkaline phosphatase (AP) was added after 1 h of blocking, and membranes were incubated for an additional 1 h. After washing the membranes twice with TBS-T followed by twice with distilled water, the membranes were developed with Western Blue® stabilized substrate and washed twice with distilled water. Signal detection on the dried membrane was performed using a Storm 860 PhosphorImager system (Amersham Biosciences).
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2

Characterizing Transcriptional Regulation Mechanisms

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DNA binding assays were performed using modified 1× binding buffer (40mM KCl, 15mM HEPES pH7.9, 1mM EDTA, 0.5mM DTT, 50% glycerol) as described previously (Dodou et al., 2003 (link)). Recombinant proteins were made using the Promega TNT Coupled Reticulocyte System according to manufacturer's instructions. Full length FoxC2, Etv2, and Sox17 were expressed from their respective pRK5 vectors using SP6 polymerase. Control and mutated control probe sequences for FOX:ETS motif from the Mef2c gene and for the SOX site from the mouse laminin 1α gene have each been described previously (De Val et al., 2008 (link); Niimi et al., 2004 (link)). ECE1 probes were designed with guanine overhangs for labeling with Klenow and 32P-dCTP. The sense strand sequences for the probes were: ECE1_FOX:ETS, 5’-gggagtctagctaaacaggaagggaggcacaatgagagga-3’; ECE1_mFEM, ’-gggagtctagctaatgaggcagggaggcacaatgagagga-3’; ECE1_SOX, 5’-ggaagggaggcacaatgagaggaagt-3’-; ECE1_mSOX, 5’-ggaagggaggcaggtagagaggaagt-3’.
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3

Radiolabeled Protein Import Assays

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[35S]-methionine radiolabelled proteins were translated using the TNT® Coupled Reticulocyte system (Promega) according to manufacturer’s instructions. Protein uptake assays were carried out into either freshly isolated mitochondria or freshly isolated plastids as previously described (Duncan et al., 2015 (link)). To confirm the intra-mitochondrial localization of imported protein, the outer membrane was ruptured by osmotic shock following import and prior to the addition of Proteinase K (PK) as detailed previously (Duncan et al., 2015 (link)). Plastid protein uptake assays were carried out by incubating precursor protein with isolated plastids (30 ug) in 3 mM ATP, 10 mM Met, 10 mM Cys, 20 mM potassium gluconate, 10 mM NaHCO3, 3 mM MgSO4, 330 mM sorbitol, 50 mm HEPES-KOH, pH 8, 0.2% BSA, and 50 mM ascorbic acid) for 25°C for 5 min with gentle agitation. Plastids were and washed in cold 50 mM HEPES-KOH, pH 8, 0.3 m sorbitol, and 3 mm MgSO2 prior to treatment with thermolysin (10 μg) and CaCl2 (5 mm) for 15 min on ice. EDTA was added to stop the reaction and plastids pelleted. All import samples were resolved by SDS-PAGE (16% (w/v) Acrylamide SDS-PAGE gels or 16.5% (w/v) Acrylamide Tricine SDS-PAGE as described in (Schägger, 2006 (link)), dried, and exposed to a phosphor-imaging screen for 24 h.
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4

In-vitro Protein Expression Protocols

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Target proteins were in-vitro expressed using rabbit reticulocyte lysate (TNT-coupled reticulocyte system; Promega; #L4600, #L4610) supplemented with either 35S-methionine/S-L-cysteine mix (PerkinElmer; #NEG772002MC) for radiography detection or with untagged Methionine (Promega #L118A) and FluoroTect™ GreenLys (Promega #L5001).
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5

Generation of p62 Constructs and Mutants

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The p62-expressing construct was generated by PCR amplification of a human p62 cDNA fragment from the hMU012675 clone (21C Frontier Human Gene Bank) and subcloned into the pcDNA 3.1/myc-His plasmid (Invitrogen) at EcoRI/XhoI sites. This method was also used to generate a series of p62 domain deletion mutants designated D1–D8, CD1–CD9, and ND1–ND6. Site-directed mutagenesis was employed to generate amino acid substitutions (X to Ala) in the p62 ZZ domain. Six ZZ mutants were subcloned as described above. These plasmids were transiently transfected using Lipofectamine 2000 (Invitrogen). Other reagents used in this study were ammonium chloride, bafilomycin A1, and HCQ (Sigma); glutathione coated plates, TBM substrate and high capacity streptavidin agarose resin (Thermo Fisher Scientific); RNAiMax (Invitrogen); GST-tagged LC3 recombinant protein (Enzo Lifescience); and TNT coupled reticulocyte system (Promega).
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6

In-vitro Protein Expression Protocol

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Target proteins were in-vitro expressed using rabbit reticulocyte lysate (TNT-coupled reticulocyte system; Promega; #L4600, #L4610) supplemented with either 35 S-methionine/S-L-cysteine mix (PerkinElmer; #NEG772002MC) for radiography detection or with untagged Methionine (Promega #L118A) and Green Lysine (FluoroTect™ GreenLys, Promega #L5001).
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